Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0768
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.068
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   1.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 446 GLSVVGKSGAALIAGGFSVPAVPEDVALVFIREDAVQS 333
           GL   G SGAALIA       +PE+  +V I  D +++
Sbjct: 301 GLLCGGSSGAALIAALKIAKDIPEEKRMVIILPDGIRN 338


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 339 YGIFPDENKCDVFWNC 386
           YG FP++ K   ++NC
Sbjct: 59  YGEFPEDEKLKCYFNC 74


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
 Frame = +3

Query: 144 HHISCDKYWKCDNGV-----AELKTCGNGL-AFDATDSKYLTE 254
           H  SCD+ W  D G        ++ C   L  FD T  K L +
Sbjct: 134 HADSCDRLWVLDTGTIGIGNTTIQACPYTLNIFDLTSDKLLRQ 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 455 ADAGLSVVGKSGAALIAGGFSVPAV 381
           + AG+ VVG + A+++AG  S+  V
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLV 33


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 326 VGSGDWGLELCPLSALN 276
           VGSG+WG  +  +  +N
Sbjct: 10  VGSGNWGSTIAKIIGIN 26


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = +3

Query: 159 DKYWKCDNGVAELKTCGNG 215
           + YW+C++   +++  G G
Sbjct: 63  ENYWQCNDKKTDIEETGRG 81


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 153 SCDKYWKCDNGVAEL 197
           +CD+ W  D GV ++
Sbjct: 119 ACDRLWGVDTGVDDI 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 252 ENCDYLHNVECGE 290
           E CDY  N+  GE
Sbjct: 40  EECDYYQNLNLGE 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,594
Number of Sequences: 438
Number of extensions: 4108
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)