Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0768
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    30   1.5  
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP...    29   2.0  
At1g44770.1 68414.m05129 expressed protein                             29   3.5  
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP...    28   6.2  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   6.2  
At5g04040.1 68418.m00384 patatin-related contains Patatin domain...    27   8.2  

>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 363 CFHQGRCRTVSNSGEWRLGARAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRYRRFSVR 190
           C   G   ++S    +R G   + +++   CEGS SS SS    W R  K++++R   V 
Sbjct: 31  CKFHGTSSSISLRS-YRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89

Query: 189 LHR 181
           L+R
Sbjct: 90  LNR 92


>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
           isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
           identical to SP|P48483 Serine/threonine protein
           phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
           GI:166799 from [Arabidopsis thaliana]
          Length = 322

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 330 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 506
           +R+YG + DE K       W      + C P  A   E  +CM     PE K+ +E+ N 
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185

Query: 507 FGCPAPGEVSNAG 545
              P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196


>At1g44770.1 68414.m05129 expressed protein
          Length = 271

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 406 REASPFQQFQKTSHLFSSGKMPYSLEQWGVEIGG 305
           +E +   +  K   ++ +GKM Y+L  WG+  GG
Sbjct: 212 QEVTALSKVGKVVDIWHAGKMFYTLSTWGLAFGG 245


>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
           isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
           identical to SP|P48485 Serine/threonine protein
           phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166803
           {Arabidopsis thaliana}
          Length = 312

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 330 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 506
           +R+YG + DE K       W      + C P  A   E  +CM     PE  N E++ N 
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194

Query: 507 FGCPAPGEVSNAG 545
                P +V +AG
Sbjct: 195 --IERPTDVPDAG 205


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   NVTVSTTLVPGLSSQYEFEVFISVSGRPRRS-CRP 103
           N    TT++  L++Q EFE  + V+ R +RS C+P
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKP 327


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
 Frame = +3

Query: 168 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 344
           W CD        CG  L  D  D  Y    C  + +  C    ++      PH  S    
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286

Query: 345 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 467
           + P +  C +  +  +    +Y C  G  Y   S+   W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327


>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
           PF01734
          Length = 825

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 23  LVPGLSSQYEFEVFISVSGRPR--RSCRPRVLQMPRRLRFLPSPHLL 157
           ++  L+S   F+    ++GR      C PR  + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,186,316
Number of Sequences: 28952
Number of extensions: 311308
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)