Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0767
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   3.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.0  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 340 LFHNPICHHLARE 302
           L HNP+ HHL +E
Sbjct: 347 LHHNPMSHHLKQE 359


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 289 CISILHEPGDDKWGYEKASERW 354
           C+ +  E  +DK GY+K  E++
Sbjct: 409 CLELFEELAEDKDGYKKFYEQF 430


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 658 YTQIRTRXQXKXVCLFCCHFL 720
           Y  +R R       LF CHFL
Sbjct: 654 YVVLRLRANNPGFWLFHCHFL 674


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 299 IDMQTSPFLSIFGCHISVTNFIRGGLKGYSLGKFKCALKKP 177
           +  QT+P    +  H S+++ + GGL G  +      L  P
Sbjct: 66  VKQQTAPHGPPYAPHPSLSSGLGGGLSGMPMPALGFGLGHP 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,887
Number of Sequences: 336
Number of extensions: 4016
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)