Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0767
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.76 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 624 YTFXDXRXACPLHPNPDTXPXEGGLL 701
           YT      ACPL+PNP     +  LL
Sbjct: 210 YTACPPTLACPLNPNPQPLTGQQELL 235


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 109 LSQQKSLXLGFCSVQLIAFLIKAKTVALTLITIVK 5
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 109 LSQQKSLXLGFCSVQLIAFLIKAKTVALTLITIVK 5
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 109 LSQQKSLXLGFCSVQLIAFLIKAKTVALTLITIVK 5
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 109 LSQQKSLXLGFCSVQLIAFLIKAKTVALTLITIVK 5
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 217 PLRPPRMKFVTEIWHPNIDKNGDVCISI 300
           PL    +  VT IWH N+    D  I I
Sbjct: 394 PLSSTGLAQVTGIWHSNLTTPDDPDIQI 421


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 434 LAGLSSFGSASIEMTLISIVSTVC 363
           LAG + FGS +I + ++ ++  +C
Sbjct: 192 LAG-TVFGSVAIAIAIVELIGIIC 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,366
Number of Sequences: 438
Number of extensions: 4181
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)