Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0766
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   280   1e-76
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.85 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   6.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  280 bits (687), Expect = 1e-76
 Identities = 124/176 (70%), Positives = 153/176 (86%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQ
Sbjct: 35  VPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQ 93

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTV
Sbjct: 94  RTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTV 153

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           P KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +      LG F
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 QLRGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 628
           Q RGST TLGNF              LTP+LW + P  ++P  E+
Sbjct: 198 QSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 26/110 (23%), Positives = 48/110 (43%)
 Frame = +1

Query: 154 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 333
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 334 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 483
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKD 337


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 452 RSFFRWLVYRTATPQL 499
           RS F+WL+  TATP+L
Sbjct: 69  RSVFQWLIALTATPRL 84


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 KATHRPLQGHRQVWFCNSPADSCPSWYWN 431
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 306 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 172
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,731
Number of Sequences: 5004
Number of extensions: 66440
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)