Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0766
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 285 3e-77
07_01_0756 + 5819367-5820038,5820847-5821005 281 3e-76
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 93 3e-19
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 2.0
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 3.5
12_02_0038 - 12630564-12630580,12630789-12631260 28 6.2
11_01_0395 + 2999855-2999920,3000605-3002191 28 8.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 285 bits (698), Expect = 3e-77
Identities = 131/176 (74%), Positives = 154/176 (87%)
Frame = +1
Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
VPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQ
Sbjct: 45 VPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQ 103
Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
RTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTV
Sbjct: 104 RTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTV 163
Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+ LG F
Sbjct: 164 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNF 219
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +2
Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 628
RGST TLGNF LTPD WRD KSP+ E+
Sbjct: 210 RGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 281 bits (690), Expect = 3e-76
Identities = 131/176 (74%), Positives = 153/176 (86%)
Frame = +1
Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
VPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQ
Sbjct: 48 VPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQ 106
Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
RTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 107 RTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 166
Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+ LG F
Sbjct: 167 PCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNF 222
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSEF 628
RGST TLGNF LTPD WR+ K+P+ E+
Sbjct: 213 RGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 92.7 bits (220), Expect = 3e-19
Identities = 50/101 (49%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Frame = +1
Query: 199 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 375
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 376 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSA 498
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSS 97
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +1
Query: 127 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 306
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 307 LPV 315
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 372 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 223
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 261 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 145
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 363 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 205
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>12_02_0038 - 12630564-12630580,12630789-12631260
Length = 162
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 396 SPADSCPSWYWNCVCASS*EASSDGWCTGLLHLSFVVQLAPW 521
+P+ S P W W ++ +A +DG TG SF + PW
Sbjct: 13 TPSPSRPLWRWGWGGGATPDARADGGVTGWTS-SFFAAVFPW 53
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 67 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 186
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,557
Number of Sequences: 37544
Number of extensions: 490827
Number of successful extensions: 1272
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -