Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0766
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 285 2e-77
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 29 4.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.6
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.6
Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical pr... 28 7.4
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 9.8
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 285 bits (699), Expect = 2e-77
Identities = 140/175 (80%), Positives = 150/175 (85%)
Frame = +1
Query: 4 PVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQR 183
PVTKLGRLV+E KI LE IYL SLPIKEFEIID L +L DEVLKI PVQKQT AGQR
Sbjct: 59 PVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQR 117
Query: 184 TRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVP 363
TRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVP
Sbjct: 118 TRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVP 177
Query: 364 CKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
CKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A LG F
Sbjct: 178 CKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNF 232
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +2
Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPY 619
+GST TLGNF LTPDLW++ L KSPY
Sbjct: 223 KGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 188 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 12
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 324 TSSNW*NRQLSKDNSASNGSG 262
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 188 RVRCPARVCFCTGMIFRTSSFRD-GPRKKSMISNSLIGKENK*MLSSLSIFPSRTRRPSL 12
R R P + T R+SS R P S +S + + + S+FPSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 138 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 281
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 138 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 281
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>Z80220-3|CAB02306.1| 601|Caenorhabditis elegans Hypothetical
protein T08G11.3 protein.
Length = 601
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = -2
Query: 441 RRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSG 262
R N ++T N P +T D R S L P +SSN + SK ++ +
Sbjct: 419 RNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTRA 478
Query: 261 DFLAALHTQ 235
DF+ H +
Sbjct: 479 DFIQKPHVR 487
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 244 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 372
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,621
Number of Sequences: 27780
Number of extensions: 392433
Number of successful extensions: 1172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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