BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0766 (700 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 301 2e-82 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 296 8e-81 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 296 8e-81 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 296 8e-81 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 296 8e-81 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 293 6e-80 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 68 5e-12 At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 32 0.32 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.9 At3g01450.1 68416.m00069 expressed protein 29 3.9 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.2 At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.8 At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 6.8 At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 6.8 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 301 bits (740), Expect = 2e-82 Identities = 137/176 (77%), Positives = 158/176 (89%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQ Sbjct: 46 VPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQ 105 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTV Sbjct: 106 RTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTV 165 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 166 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ +KSPY E Sbjct: 212 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 296 bits (727), Expect = 8e-81 Identities = 137/176 (77%), Positives = 155/176 (88%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQ Sbjct: 54 VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ ++SPY E Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 296 bits (727), Expect = 8e-81 Identities = 137/176 (77%), Positives = 155/176 (88%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQ Sbjct: 54 VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ ++SPY E Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 296 bits (727), Expect = 8e-81 Identities = 137/176 (77%), Positives = 155/176 (88%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQ Sbjct: 54 VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ ++SPY E Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 296 bits (727), Expect = 8e-81 Identities = 137/176 (77%), Positives = 155/176 (88%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQ Sbjct: 54 VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ ++SPY E Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 293 bits (720), Expect = 6e-80 Identities = 135/176 (76%), Positives = 154/176 (87%) Frame = +1 Query: 1 VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180 VPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQ Sbjct: 55 VPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQ 114 Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360 RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV Sbjct: 115 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 174 Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528 PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+ LG F Sbjct: 175 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 230 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625 RGST TLGNF LTP+ W++ ++SPY E Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 68.1 bits (159), Expect = 5e-12 Identities = 36/118 (30%), Positives = 68/118 (57%) Frame = +1 Query: 130 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 309 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 310 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 483 V + K T P + G G+ V L PA GTG+++ + +L+MAGV++ Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259 >At1g64880.1 68414.m07355 ribosomal protein S5 family protein contains similarity to 30S ribosomal protein S5 GI:6969105 from [Campylobacter jejuni] Length = 515 Score = 32.3 bits (70), Expect = 0.32 Identities = 28/116 (24%), Positives = 52/116 (44%) Frame = +1 Query: 136 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 315 V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421 Query: 316 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 483 R + HT+ + + L PAP TG+ + V K +L +AG ++ Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKN 470 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 28.7 bits (61), Expect = 3.9 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -3 Query: 338 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 159 LL Q L++ + A R VA + H +P + P L P N R+R A CF Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224 Query: 158 CTGMIFRTSSFR 123 +G + R + R Sbjct: 225 -SGCVPRLEAAR 235 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 28.7 bits (61), Expect = 3.9 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = -3 Query: 359 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 180 T+ +LL Q L++ + A + VA + H +P + P L P N R+R Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217 Query: 179 CPARVCF 159 A CF Sbjct: 218 AKASTCF 224 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 196 AFVAIGDNNGHIGLGVKCSKE 258 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At2g04050.1 68415.m00386 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile: PF01554 uncharacterized membrane protein family Length = 476 Score = 27.9 bits (59), Expect = 6.8 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +1 Query: 352 HTVPCKVTGKCGSVTVRL 405 H VPCK T K G VTV L Sbjct: 11 HLVPCKDTWKSGQVTVEL 28 >At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 427 Score = 27.9 bits (59), Expect = 6.8 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +1 Query: 292 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 471 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 472 GVQ 480 GV+ Sbjct: 257 GVE 259 >At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029 Length = 408 Score = 27.9 bits (59), Expect = 6.8 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = +1 Query: 292 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 471 A +S+ P RG G P T C+ G + + RG+GIV +L+ Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256 Query: 472 GVQ 480 GV+ Sbjct: 257 GVE 259 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,195,646 Number of Sequences: 28952 Number of extensions: 373892 Number of successful extensions: 973 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 948 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 972 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1496852856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -