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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0766
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   301   2e-82
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   296   8e-81
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   296   8e-81
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           296   8e-81
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   296   8e-81
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             293   6e-80
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    68   5e-12
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con...    32   0.32 
At3g18530.1 68416.m02357 expressed protein similar to unknown pr...    29   3.9  
At3g01450.1 68416.m00069 expressed protein                             29   3.9  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   5.2  
At2g04050.1 68415.m00386 MATE efflux family protein similar to r...    28   6.8  
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron...    28   6.8  
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron...    28   6.8  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  301 bits (740), Expect = 2e-82
 Identities = 137/176 (77%), Positives = 158/176 (89%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIMPVQKQTRAGQ
Sbjct: 46  VPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQ 105

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTV
Sbjct: 106 RTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTV 165

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 166 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 221



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   +KSPY E
Sbjct: 212 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQE 253


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  296 bits (727), Expect = 8e-81
 Identities = 137/176 (77%), Positives = 155/176 (88%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQTRAGQ
Sbjct: 54  VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   ++SPY E
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  296 bits (727), Expect = 8e-81
 Identities = 137/176 (77%), Positives = 155/176 (88%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQTRAGQ
Sbjct: 54  VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   ++SPY E
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  296 bits (727), Expect = 8e-81
 Identities = 137/176 (77%), Positives = 155/176 (88%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQTRAGQ
Sbjct: 54  VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   ++SPY E
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  296 bits (727), Expect = 8e-81
 Identities = 137/176 (77%), Positives = 155/176 (88%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQTRAGQ
Sbjct: 54  VPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQ 113

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 229



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   ++SPY E
Sbjct: 220 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 261


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  293 bits (720), Expect = 6e-80
 Identities = 135/176 (76%), Positives = 154/176 (87%)
 Frame = +1

Query: 1   VPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQ 180
           VPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQTRAGQ
Sbjct: 55  VPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQ 114

Query: 181 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 360
           RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 115 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 174

Query: 361 PCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSASWFNWHLGKF 528
           PCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+      LG F
Sbjct: 175 PCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNF 230



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 500 RGSTGTLGNFXXXXXXXXXXXXXXLTPDLWRDIPLTKSPYSE 625
           RGST TLGNF              LTP+ W++   ++SPY E
Sbjct: 221 RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQE 262


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 36/118 (30%), Positives = 68/118 (57%)
 Frame = +1

Query: 130 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 309
           + V+++  V K  + G++ +F+A V +GD  G++G+G   +KEV  A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208

Query: 310 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 483
            V        + K  T P +  G  G+  V L PA  GTG+++    + +L+MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259


>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
           contains similarity to 30S ribosomal protein S5
           GI:6969105 from [Campylobacter jejuni]
          Length = 515

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 28/116 (24%), Positives = 52/116 (44%)
 Frame = +1

Query: 136 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 315
           V+ +  V K T+ G+  R+ A +  G+  G IG     ++   +A++ A      ++  V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421

Query: 316 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQD 483
            R        + HT+   +        + L PAP  TG+ +  V K +L +AG ++
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKN 470


>At3g18530.1 68416.m02357 expressed protein similar to unknown
           protein GB:AAF24615 from [Arabidopsis thaliana]
          Length = 297

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 338 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 159
           LL Q  L++ +        A R  VA +  H +P  + P L P   N   R+R  A  CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224

Query: 158 CTGMIFRTSSFR 123
            +G + R  + R
Sbjct: 225 -SGCVPRLEAAR 235


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 359 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 180
           T+    +LL Q  L++ +        A +  VA +  H +P  + P L P   N   R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217

Query: 179 CPARVCF 159
             A  CF
Sbjct: 218 AKASTCF 224


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 AFVAIGDNNGHIGLGVKCSKE 258
           AFVA G NN H+G  V  S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At2g04050.1 68415.m00386 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 352 HTVPCKVTGKCGSVTVRL 405
           H VPCK T K G VTV L
Sbjct: 11  HLVPCKDTWKSGQVTVEL 28


>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
           similarity to mitochondrial DnaJ protein (AtJ1)
           GI:564030 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
           region, PF00684: DnaJ central domain (4 repeats);
           identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
          Length = 427

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 292 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 471
           A +S+ P  RG  G     P T  C+     G +      + RG+GIV      +L+   
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256

Query: 472 GVQ 480
           GV+
Sbjct: 257 GVE 259


>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
           similarity to mitochondrial DnaJ protein (AtJ1)
           GI:564030 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
           region, PF00684: DnaJ central domain (4 repeats);
           identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
          Length = 408

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 292 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 471
           A +S+ P  RG  G     P T  C+     G +      + RG+GIV      +L+   
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256

Query: 472 GVQ 480
           GV+
Sbjct: 257 GVE 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,646
Number of Sequences: 28952
Number of extensions: 373892
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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