Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0765
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.4  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   6.0  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   6.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.9  

>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  RVKPRVLHQAVIEANANPLHVIAIGIGF 148
           +V P ++HQA+ E  A+PL  +   + F
Sbjct: 576 KVTPGLIHQAISEMTASPLQKVLRNLSF 603


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 EYGCAKDTPRCFPTVKGKPXYVYSDKHT 595
           E+GC K TPR F  V+     +YSD  T
Sbjct: 263 EFGCNKVTPRVFTEVQA----IYSDNMT 286


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 316 RIIIFADICEDGQGTSTLSYIWTGT*SLKNIARKTNSC 429
           RI+ F  +     G + LSY+++GT    ++A   + C
Sbjct: 255 RIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKC 292


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 446 QRSTFYKKYKMKIVVGEDGTVH 511
           Q STFYK++   I + +DG ++
Sbjct: 454 QNSTFYKEFISNISMSDDGRIY 475


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 2    SSPLSPFNIETEYTLFVPDSVRVKPRVLHQAVI 100
            SSP SPF IETE    + D++  K ++ + + +
Sbjct: 1170 SSPGSPFPIETETISSITDTLSDKQKLKYDSSV 1202


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 550 WKTSRCIFSTSIFVYCSI 497
           W+ + C+ ST I+ YCS+
Sbjct: 778 WEVAGCVASTLIYHYCSM 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,114
Number of Sequences: 5004
Number of extensions: 68362
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)