Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0765
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1049 - 10627636-10628041,10630972-10631115,10631205-106318... 31 0.67
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524... 31 0.67
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 30 1.5
05_01_0348 + 2726710-2727026,2727289-2727459,2727555-2727628,272... 30 2.0
08_02_1500 + 27562593-27562811,27563028-27563080,27563941-275640... 29 3.5
07_01_0609 + 4517467-4517529,4517627-4517701,4517914-4518030,451... 29 3.5
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 3.5
10_01_0294 + 3052598-3052759,3052817-3053311 29 4.7
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261... 29 4.7
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 29 4.7
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 28 6.2
03_03_0182 - 15190713-15191114,15191247-15191315 28 8.2
03_02_0545 + 9373344-9374963 28 8.2
01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314... 28 8.2
>08_01_1049 -
10627636-10628041,10630972-10631115,10631205-10631869,
10632709-10633110
Length = 538
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 365 LYHTFGPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGTVHEYGCAKD 532
+ T P VL+T+ E++I+ + K ++KY KIV G Y C D
Sbjct: 357 IIETSTPLTPVLRTVREQKIIVQAGKTSDGYRWRKYGQKIVKGNPNPRSYYRCTHD 412
>06_01_0719 +
5239238-5239635,5239735-5239945,5240379-5240454,
5240573-5240675,5241089-5241157,5241318-5241354,
5241445-5241519,5241598-5241649,5241752-5241796,
5241994-5242080,5242348-5242445
Length = 416
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 41 TLFVPDSVRVKPRVLHQAVIEANANPLHVIAIGIGFHEIKCQRI 172
T+F D++ K + A +E +++P + +G+GF +K R+
Sbjct: 175 TIFQGDAIEPKTGIKFPAFLEDDSSPSTTVLVGMGFKGVKVMRV 218
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 643 QNVFRNFTHISETARRSVFIRVDVXRFAFDCWKTSRCIFSTSIFVYCSIFS 491
+++F + I+ET +F+ V + D WKTS F TS+ ++ I S
Sbjct: 315 RHIFATLSFIAETF---IFLYVGMDALDIDKWKTSETSFKTSLGIFGIIIS 362
>05_01_0348 +
2726710-2727026,2727289-2727459,2727555-2727628,
2727872-2727969,2728159-2728227,2728773-2728819,
2728949-2729072,2729148-2729216,2729297-2729400,
2729826-2729901,2730275-2730375,2730648-2730705
Length = 435
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 40 YTFCARFSSGKTTGLASSCD*SQRQSFTCHS 132
+ FC +G+TTG ++ Q Q+F CHS
Sbjct: 54 FRFCVNEKNGQTTGQSNGSLIQQGQNFRCHS 84
>08_02_1500 +
27562593-27562811,27563028-27563080,27563941-27564020,
27564660-27564742
Length = 144
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 568 RFAFDCWKTSRCIFSTSIFVYCSIFSDN 485
+FA + K +RCI S +IF CS+ D+
Sbjct: 115 KFADEAMKNNRCISSVTIFGACSLLYDH 142
>07_01_0609 +
4517467-4517529,4517627-4517701,4517914-4518030,
4518533-4518647,4519328-4519433,4519684-4519801,
4519905-4519972,4520697-4520830,4520932-4520975,
4521100-4521176,4521415-4521562,4522155-4522216,
4522373-4522472
Length = 408
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 540 DVFQQSKANLXTSTRINTLRLAVS-EICVKLRNTFWMYWSKPGVXCWLETSSLL 698
D+ Q K + ++ TL A++ ++C+++ + + PG WL++ S L
Sbjct: 224 DMTNQLKKRMMKKRKVKTLAFAITNDVCIEVNTYALIRSTTPGAITWLDSISNL 277
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 56 DSVRVKPRVLHQAVIEANANPLHVIAIGIGFHEIKCQRI 172
D+ K + ++E N+NP + +G+GF ++ R+
Sbjct: 165 DATEPKTGIKFPTLLEDNSNPTSEVLVGMGFRSMRIMRV 203
>10_01_0294 + 3052598-3052759,3052817-3053311
Length = 218
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 410 PEKQIVAEKVKEQRSTFYKKYKMKIVVGEDGT-VHEYGCAKDTP--RCFPTVKG 562
PEK E+ KE + +KYK+K+V + GT + G K P P++KG
Sbjct: 37 PEK-FTPEQKKEFEAMLQQKYKIKVVADDPGTSSFKDGDGKQAPDGSAQPSIKG 89
>05_01_0333 -
2614123-2614202,2614466-2614553,2614644-2614721,
2614795-2614887,2614982-2615101,2615685-2615726,
2615822-2616091,2617188-2617339,2617771-2618233
Length = 461
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 422 IVAEKVKEQRSTFYKKYKMKI-VVGEDGTVHEYGCAKDTPRCFPTVKGKPXYVYSDKHTP 598
IV V+ TF Y +I V+G D + C P + G+ Y+Y D TP
Sbjct: 235 IVESPVQIPNFTFNLNYAQQIFVLGRDENLCLSISHGKVQYCNPFLCGRHHYMYVDTATP 294
Query: 599 PCCL 610
C L
Sbjct: 295 KCAL 298
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = -1
Query: 553 CW-KTSRC---IFSTSIFVYCSIFSDNNL 479
CW K S C +FS S F Y S FS NN+
Sbjct: 16 CWLKRSLCALVLFSASYFAYFSFFSGNNV 44
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 330 KYNDSGNGNAIGSG-TFDRYSVLINSACGPVTASHIVPVESLVYFSVQSL*FQQ 172
+YNDSG G + +G R + ++ + +++ P+ESL Y V++ F+Q
Sbjct: 42 RYNDSGGGRSGSAGEPLLRKRTMNTTSQIAIVGANVCPIESLDYEVVENDLFKQ 95
>03_03_0182 - 15190713-15191114,15191247-15191315
Length = 156
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 425 VAEKV-KEQRSTFYKKYKMKIVVGEDGTVHEYG 520
V EK+ K ++ T +KYK+K+V + GT G
Sbjct: 17 VKEKIQKTRKGTLVQKYKVKVVADDPGTSSSRG 49
>03_02_0545 + 9373344-9374963
Length = 539
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 276 YSVLINSACGPVTASHIVPVESLVYFSVQSL*FQQIL*HLISWK 145
++ ++ A GPVTA+ + +S Y + SL F I +SWK
Sbjct: 397 FTGVMRHASGPVTAAKTIYEDSKGYLIIISLPFADIQRVKVSWK 440
>01_06_1462 +
37530509-37530874,37531012-37531099,37531352-37531484,
37531567-37532326
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 260 LIKTEYLSKVPDPIAL--PFPESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEKQIVAE 433
++ E+ K+ P+++ P P +Q Y+K + + YH + V+ K ++A
Sbjct: 105 VLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLA- 163
Query: 434 KVKEQRSTFYKKYKMKIVVG 493
K R T +Y + +V G
Sbjct: 164 -AKRHRKTTCTEYTISMVSG 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,455,289
Number of Sequences: 37544
Number of extensions: 427761
Number of successful extensions: 983
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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