Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0765
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical ...    28   7.4  
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   9.8  

>U00036-10|AAP82638.1|  276|Caenorhabditis elegans Hypothetical
           protein R151.4a protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 380 GPGRKVLKTLPEKQIVAEKVKEQRSTFYKKYKMKIVVGE-DGTVHEYG-CAKDTPRC 544
           GP  +V+  +  KQ+ A  + E+R  F ++ +M   VG+ D  V  YG C  +  +C
Sbjct: 18  GPNGQVIP-VAVKQLKANAIDEEREEFVREIQMMQTVGQHDNIVTMYGYCMDEQLQC 73


>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 342 TYVCKYNDSGNGNAIGSGTFDRYSVLINSACGPVTASHIVPVESLV 205
           T + ++ D+ + N I S T+DRY +++ +     T  H + +  ++
Sbjct: 163 TLIGQFLDTSSVNQISSFTWDRYELMVENKTSHYTVFHPIQMALII 208


>AC006761-5|AAF60550.3|  425|Caenorhabditis elegans Hypothetical
           protein Y41G9A.3 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 529 FSTSIFVYCSIFSDNNLHFIFLIECRPLL 443
           ++T+++    IF D N+H IF+++ R +L
Sbjct: 366 YTTTLWSLIEIFIDKNVHRIFMVDDRTIL 394


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 649 YIQNVFRNFTHISETARRSVFIRVDVXRFAFD-CWKTSRCIFSTSIFVYCSIFSD 488
           YI   F NF  I+   R +  I+ ++    F  C  T+RC+  T+   +C++F +
Sbjct: 501 YILGEFGNF--IAGDERSTAKIQFELLHSKFHLCSITTRCLLLTTYIKFCNLFPE 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,063,591
Number of Sequences: 27780
Number of extensions: 388817
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)