Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0765
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 541 SRCIFSTSIFVYCSIFSDNNLHFIFLIECRPLL 443
           +R + S     YC++FS +  HF  +++  PL+
Sbjct: 529 ARRVASVRAETYCNLFSLSVDHFNAVLDQYPLM 561


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 541 SRCIFSTSIFVYCSIFSDNNLHFIFLIECRPLL 443
           +R + S     YC++FS +  HF  +++  PL+
Sbjct: 497 ARRVASVRAETYCNLFSLSVDHFNAVLDQYPLM 529


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 114 LALASITA*CKTRGFTRTESGTKSVYSV 31
           L LAS+ A   + G T T +GT+ ++ +
Sbjct: 167 LGLASVKAEPGSTGTTTTSTGTRLLHGI 194


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 266 KTEYLSKVPDPIALPFPESLYLQT---YVKMAKVQVLY 370
           K + +SKVP P +LP   + ++ +   Y K+ K+   Y
Sbjct: 46  KFKTVSKVPGPFSLPIFGTRWIFSCIGYYKLNKIHDAY 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,909
Number of Sequences: 438
Number of extensions: 4818
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)