Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0765
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13210.1 68417.m02054 pectate lyase family protein similar to...    29   2.2  
At2g17036.1 68415.m01966 F-box family protein  ; similar to SKP1...    29   3.9  
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ...    29   3.9  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    28   6.8  
At1g22080.1 68414.m02761 hypothetical protein                          28   6.8  
At5g02480.1 68418.m00181 expressed protein p                           27   9.0  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    27   9.0  
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    27   9.0  

>At4g13210.1 68417.m02054 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 418

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 227 ICDAVTGPHALLIKTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGPG 388
           + DA+ G  A+ I   YL+   + I L   +S    T  KM +V + Y+ FG G
Sbjct: 242 LIDAIMGSTAITISNNYLTHHNEAILLGHTDS---YTRDKMMQVTIAYNHFGEG 292


>At2g17036.1 68415.m01966 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 428

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +2

Query: 266 KTEYLSKVPDPIALPFPESLYLQTYVKMAKVQVLYHTFGPGRKVLKTLPEK 418
           KTE ++K+P+   L +P   ++ T  +++  Q L H   P R VLK + EK
Sbjct: 362 KTELVNKLPEYAKLFWPPPPWITTSHEVSGFQSLNH---PNRVVLKIILEK 409


>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 alpha
           subunit, putative similar to branched-chain alpha-keto
           acid dehydrogenase E1-alpha subunit [Gallus gallus]
           GI:12964598; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 472

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 287 VPDPIALPFPESLYLQTYVKMAKVQVLYHTF 379
           +PD   +P  E L ++ Y +MA +QV+ H F
Sbjct: 117 IPDSDFIPVSEKLAVRMYEQMATLQVMDHIF 147


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 29  ETEYTLFVPDSVRVKPRVLHQAVIEANANPLHVIAIG 139
           +T+Y LF+ D VR+ P  +     E   NP   I  G
Sbjct: 173 DTKYVLFLDDDVRLHPGTIGALTTEMEKNPEIFIQTG 209


>At1g22080.1 68414.m02761 hypothetical protein
          Length = 475

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 607 TARRSVFIRVDVXRFAFDCWKTSRCIFS 524
           TARR  F   D  R AF CW+ +R  F+
Sbjct: 53  TARRGPFHLSDDGRVAFLCWRVARPAFA 80


>At5g02480.1 68418.m00181 expressed protein p
          Length = 508

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 276 YSVLINSACGPVTASHIVPVESLVYFSVQSL*FQQIL*HLISWK 145
           ++ ++ ++CGPVTA+  V  +   Y  V +L F  +    +SW+
Sbjct: 368 FTGVMKNSCGPVTAAKTVYEDEEAYLVVITLPFVDLNTVKVSWR 411


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +2

Query: 38  YTLFVPDSVRVKPRVLHQAVIEANANPLHVIAIGIGFHEIKCQR---ICWNYRDWTLKYT 208
           Y  F+ D   V  ++L  +V EA    +H ++I              +C +Y D    Y 
Sbjct: 292 YKGFLEDGKGVAVKILKPSVKEAVKEFVHEVSIVSSLSHSNISPLIGVCVHYNDLISVYN 351

Query: 209 KDSTGTICDAVTGPHAL 259
             S G++ + + G H L
Sbjct: 352 LSSKGSLEETLQGKHVL 368


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 575 VYSDKHTPPCCLRNMREVTKHVLDVLEQAWXXMLVGNI 688
           VYS   + P  L + R+V   +L+  E++W  M+ G +
Sbjct: 193 VYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,896,360
Number of Sequences: 28952
Number of extensions: 350471
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)