Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0764
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   7.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   9.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   9.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   9.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 217 PPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGS 339
           PP  ++   G+G       P GA  P  +  + P++R   S
Sbjct: 52  PPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLPTQRTSTS 92


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 103 LPESRHREDKYRHCG 59
           LP  RH +D+  +CG
Sbjct: 377 LPTHRHPQDEIPYCG 391


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 284 APSGRSVDRGSPLPHPGSDLVGGS 213
           +PSG + ++ S  P+P +  + GS
Sbjct: 59  SPSGNTPNKSSTSPYPPNHPLSGS 82


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 396 PAAPXGRPDGLPYR 355
           PAAP  R +G P R
Sbjct: 344 PAAPANRGNGFPKR 357


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 289 EPRRLVVVLTAVAPYLI 239
           +P  LVVVLT + P+++
Sbjct: 448 DPIPLVVVLTHLIPFML 464


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 114 EKHVFPKAVIVRINIVTVAISSTIIQI 34
           E+H F K      NIV V++++ ++ I
Sbjct: 35  ERHSFYKIYKYTYNIVAVSLTAYMVYI 61


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  YLSNLDNSTTDSHSDDIYPH 84
           YL++ DNS T   + D   H
Sbjct: 66  YLNHFDNSVTPMVNHDFTQH 85


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  YLSNLDNSTTDSHSDDIYPH 84
           YL++ DNS T   + D   H
Sbjct: 66  YLNHFDNSVTPMVNHDFTQH 85


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  YLSNLDNSTTDSHSDDIYPH 84
           YL++ DNS T   + D   H
Sbjct: 66  YLNHFDNSVTPMVNHDFTQH 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,885
Number of Sequences: 336
Number of extensions: 2304
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)