Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0764
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.0
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 1.3
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 3.1
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 4.1
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 25 4.1
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 25 5.4
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 25 7.1
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 24 9.4
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.4
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 24 9.4
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 278 SGRSVDRGSPLPHPGSDLVGGSALYQKKKKWYLPARTHKRSYQQ*DHVIDP 126
+G+ V PH D G+ + KK+ LPA + + YQ+ + +I P
Sbjct: 195 TGQQVFEVEKYPHVYGDKRLGNTISVIGKKFALPAGSEREDYQKYEEIIVP 245
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 19 ANYLSNLDNSTTDSHSDDIYPHDDGFREDVLLEKLEGSITWSYCW 153
A Y +N N T DS+ YP+ G +D+ L+ GSI W
Sbjct: 398 AIYAANPYNHTDDSY----YPYYAGVEKDIFLKNPNGSIYIGAVW 438
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 3.1
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 191 FFFSGRGPNL-LRGQNPDEVGGYRGQHYDQTARLTPRTPSRRSLRGESK 334
F + GPNL L G PD Y+G + P PSRR RG K
Sbjct: 428 FEITDAGPNLSLSGHQPDNKY-YKGFSSAPNLAVVPELPSRR-FRGFEK 474
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 252 ATAVNTTTRRRGSPQGLPADGAFEAN 329
A +N+++ GSP LP++ AFE N
Sbjct: 421 APVINSSSSLSGSPITLPSNTAFEFN 446
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 219 RFGPLPEKKKVVPTRADSQEVLPAVRP 139
R G +P+ K++PT ++ +++L RP
Sbjct: 209 RSGKIPKAFKIIPTLSNWEDILYLTRP 235
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 173 ARVGTTFFFSGRGPNLLRG 229
A+ G FF G G N+LRG
Sbjct: 282 AKEGARSFFKGAGANILRG 300
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 7 RRF*ANYLSNLDNSTTDSHSDDIYPHDDGFREDVLLEKLEGSIT 138
RR+ Y+ + D+ +TD++ DD Y + + +++ EG T
Sbjct: 89 RRYGCQYVVHGDDISTDANGDDCYRFAKAADQYLEVKRTEGVST 132
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 325 RIEGSETSAVSVRQPVGPPXRCRWCPGIPRWTXTXLPGRGA 447
R +E S S PVGPP W P T T L + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165
>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +2
Query: 110 FSKN*KDQLHGLTAGRTSCESARVGTTF---FFSGRG-PNLLR 226
FSKN K + HG++ R + +S V F F SG P L+R
Sbjct: 25 FSKNDKIRFHGVSLDRKALDSFMVRNNFKKRFVSGINLPILIR 67
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 28 LSNLDNSTTDSHSDDIYPHDD 90
+ NL+N S+S +IY H D
Sbjct: 64 VGNLENQKNRSYSSEIYLHSD 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,017
Number of Sequences: 5004
Number of extensions: 36378
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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