Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0764
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0281 + 26912419-26913099 35 0.035
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197... 29 1.3
04_04_0171 - 23282840-23283036,23283360-23283660,23283747-232840... 29 2.3
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 2.3
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 28 3.0
10_01_0204 + 2199778-2200835,2201212-2201311 28 4.0
07_01_1017 - 8662144-8662466,8662554-8663535 28 4.0
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 28 4.0
05_06_0078 - 25412770-25413852 28 4.0
04_03_0081 - 10829429-10829758 28 4.0
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602... 27 5.3
11_06_0503 - 24374657-24375211 27 7.0
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 27 7.0
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701... 27 7.0
01_06_0698 - 31311529-31312055,31312160-31312346 27 7.0
02_01_0174 - 1193696-1193726,1193822-1194175,1194307-1194542,119... 24 8.2
11_06_0610 - 25449085-25453284 27 9.2
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 27 9.2
>05_06_0281 + 26912419-26913099
Length = 226
Score = 34.7 bits (76), Expect = 0.035
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 217 PPTRSEPG*GRGLPRSTL--RPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRC 390
PP+ PG L L RP G P S P P+ ++ +R+P GP
Sbjct: 62 PPSPFAPGGPITLAGGWLVGRPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPS 121
Query: 391 RWCPGIPRWTXTXLPG 438
W PG+P T T L G
Sbjct: 122 PWHPGVP--TQTQLAG 135
>04_01_0175 -
1972361-1972429,1973185-1973334,1974956-1975105,
1975370-1975417,1975717-1975793,1975897-1975999,
1977103-1977233,1978793-1978970,1980656-1980676,
1981233-1981290,1981381-1981444,1982261-1982431,
1982526-1982637,1982779-1983021,1983783-1983964,
1984785-1984920
Length = 630
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 211 AEPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXR 387
A + S P RGLPRS+ P G + + + T +E S T P P +
Sbjct: 36 AAAASSSSPADDRGLPRSSTMPGGINNVEITNETAGPSNLERSRTERRRQNNPADDPTK 94
>04_04_0171 -
23282840-23283036,23283360-23283660,23283747-23284070,
23284678-23284698,23284877-23285788
Length = 584
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 137 HGLTAGRTSCESARVGTTFFFSGRGPNLLRGQNPDEVGGYRGQH 268
+G+ + + +S R G T F R NPD++GG G H
Sbjct: 538 YGVNGRQENADSERQGLTKLFPWLPKPGNRPTNPDDIGGVMGYH 581
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 352 VSVRQPVGPPXRCRWCPGIPRW 417
+ + + V PP R WCP RW
Sbjct: 1 MEIARVVAPPLRLAWCPASRRW 22
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 266 VDRGSPLPHPGSDLVGGSALYQKKKKWYLPARTHKRS 156
++R +P P S V G ++ + K W+ P RS
Sbjct: 4 LERSEQMPMPASRAVPGGLVFHQSKDWWQPGIVDDRS 40
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/69 (26%), Positives = 26/69 (37%)
Frame = -2
Query: 392 RHRXGGPTGCRTETADVSEPSIRLEGSVGWESLG*AAPSGRSVDRGSPLPHPGSDLVGGS 213
R R P R A +E R GS W + + SGR+ P ++VGG
Sbjct: 101 RRRKARPEMRRRNVAQAAEARARSTGSSRWRKISTSISSGRAGAADGEAILPPWEVVGGV 160
Query: 212 ALYQKKKKW 186
+ +W
Sbjct: 161 GEWIVSLRW 169
>07_01_1017 - 8662144-8662466,8662554-8663535
Length = 434
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -2
Query: 425 VXVQRGIPGHQRHR-----XGGPTGCRTETADVSEPSIRL 321
+ +Q+GIPG +++R G P + T D+ P++RL
Sbjct: 146 IDLQKGIPGFEKNRFWKDIFGAPICKKPRTNDIHSPTLRL 185
>07_01_0542 +
4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 223 TRSEPG*GRGLP-RSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVR 363
TR EP R P S + P DS P+ SRR S TSA S R
Sbjct: 711 TRHEPRKARPPPPASAIVPVPLRDGVDSSPSSSSRRGRTSSTSAASAR 758
>05_06_0078 - 25412770-25413852
Length = 360
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 314 SVGWE-SLG*AAPSGRSVDRGSPLPHPGSDLVGGS 213
S GWE ++G A G V GS G D+VGGS
Sbjct: 91 SGGWEGTVGGGAGEGGDVAGGSGFAGEGGDVVGGS 125
>04_03_0081 - 10829429-10829758
Length = 109
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 235 PG*GRGLPRSTLR-PDGAAHPKDSQPTEPSRRIEGSETSAV 354
PG G R + PDGAA P D + S+ ++G + V
Sbjct: 34 PGIGSSKDREVQQAPDGAAQPSDKSVADGSQGVQGDGSQGV 74
>01_01_0778 +
6024154-6024315,6024725-6024802,6024909-6025071,
6025484-6025788,6025897-6025961,6026570-6026763,
6027233-6027441,6028147-6028325,6029345-6029459,
6029520-6029558
Length = 502
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 268 VLTAVAPYLIRVLTS*EVRPSTRKKKSGTYPRGLT 164
+LTA A YL V S RPS R K TY R +T
Sbjct: 439 LLTAFAGYLGLVSASDLARPSQRSKMPLTYRRQIT 473
>11_06_0503 - 24374657-24375211
Length = 184
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 284 APSGRSVDRGSPLPHPGSDLVGGSALYQKKKK 189
APSG+ D P P P + G + + +KKKK
Sbjct: 25 APSGKKSDGQIPAPAPVTSDEGKAPVMEKKKK 56
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 252 PPTSSGF*PRRRFGPLPEKKKVVPTRADSQEVL 154
PPT S PRRRF P P K+ P R + + L
Sbjct: 114 PPTESREAPRRRFEPSP-KQPHTPDRCNYYKAL 145
>01_06_1714 -
39368509-39369153,39369607-39369850,39369995-39370191,
39370607-39370708,39370826-39371026,39371138-39371381,
39371813-39371983,39372450-39372751
Length = 701
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 32 RIWIIVLLIATVTIFILTMTAF 97
RIWII + A+V +F+L ++ F
Sbjct: 659 RIWIIAVWAASVAVFLLVISMF 680
>01_06_0698 - 31311529-31312055,31312160-31312346
Length = 237
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 104 TCFSKN*KDQLHGLTAGRTSCESARVGTTFFFSGRGPNLLRGQ 232
TC + N +L + AGR+ R G FF SG +GQ
Sbjct: 84 TCSTGNPVQRLEDVAAGRSVFRFDRSGPFFFISGDEDRCQKGQ 126
>02_01_0174 -
1193696-1193726,1193822-1194175,1194307-1194542,
1194629-1194741,1195963-1196161,1196427-1196513
Length = 339
Score = 24.2 bits (50), Expect(2) = 8.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 275 GRSVDRGSPLPHPGSDLVGGS 213
GR DRGSP H G+ GG+
Sbjct: 282 GRGGDRGSPDYHRGASPQGGN 302
Score = 21.0 bits (42), Expect(2) = 8.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 287 AAPSGRSVDRGSP 249
A+P GR +RGSP
Sbjct: 256 ASPYGRGRERGSP 268
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +1
Query: 217 PPTRSEPG*GRGLPRSTLR-PDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCR 393
PP S P P S + P AHP P+E S E+S + + PP
Sbjct: 770 PPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGHE 829
Query: 394 WCPGIP 411
P P
Sbjct: 830 GTPPSP 835
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 244 GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSV 360
GR LP T P G P P P RR+ A S+
Sbjct: 36 GRALPPPTWLPHGRLSPAHPLPFAPPRRLSRPPPPATSL 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,834
Number of Sequences: 37544
Number of extensions: 305259
Number of successful extensions: 996
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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