Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0764
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0) 31 0.33
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 1.3
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.1
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78) 28 4.1
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 27 5.4
SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 27 5.4
SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 27 5.4
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 27 7.2
SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_31574| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 27 9.5
>SB_47179| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
Length = 622
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 441 PTRQXGXGPAGYSGTPAAPXGRPDG 367
P +Q P GY G P+AP G P G
Sbjct: 429 PPQQPSYPPGGYGGPPSAPYGAPPG 453
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 31.1 bits (67), Expect = 0.44
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HPK P P +R+ S + P GPP + PG P
Sbjct: 585 GTPHPRVPPPGAPHPKVPPPGAPYQRLPYSGAYHPRL-PPPGPPYQRVPPPGAP 637
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P R+ S V P P R PG P
Sbjct: 525 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVP-PPGAP 577
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P +R+ V P P R PG P
Sbjct: 475 GAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVP-PPGAP 527
Score = 27.9 bits (59), Expect = 4.1
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = +1
Query: 208 RAEPPTRSEPG*GR-GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPX 384
R PP S P G P + P GA HP+ P P R+ V P P
Sbjct: 550 RVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGAPHPKVPPPGAPYQ 609
Query: 385 R 387
R
Sbjct: 610 R 610
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P R+ V P P R PG P
Sbjct: 495 GAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVP-PPGAP 547
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +1
Query: 208 RAEPPTRSEPG*GR-GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPX 384
R PP P G P P GA HP+ P P R+ V P P
Sbjct: 420 RVRPPGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHP 479
Query: 385 RCRWCPGIP 411
R PG P
Sbjct: 480 RVP-PPGAP 487
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P R+ V P P R PG P
Sbjct: 445 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVP-PPGAP 497
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P R+ V P P R PG P
Sbjct: 455 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVP-PPGAP 507
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 250 GLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCRWCPGIP 411
G P + P GA HP+ P P R+ V P P R PG P
Sbjct: 465 GAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVP-PPGAP 517
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 277 DGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXRCR 393
DG P +QPT+ I+ T + P GPP C+
Sbjct: 70 DGITSPNHTQPTQVLPTIQPPPTHPYRQQGPAGPPVTCQ 108
>SB_47111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = +1
Query: 211 AEPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGS 339
A P TRS R P T + A HPK QP PS R GS
Sbjct: 39 ATPSTRSYDSLQRRAPEGTTVCN-AEHPKARQPATPSTRRHGS 80
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 420 GPAGYSGTPAAPXGRPDGLPYRDGRR 343
G GY G PA P GR DG+P GR+
Sbjct: 1853 GWKGYPGNPAGPPGR-DGIPGPPGRQ 1877
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 259 RSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPP 381
R +L PD + S+P + +R++E E A + QP GPP
Sbjct: 134 RKSLSPDSHHSRRKSKPRKLARQME--EDEAWNPEQPFGPP 172
>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 262 STLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQP 369
S P AHP+ S PTEP++R+ A S R+P
Sbjct: 57 SDTEPTHRAHPQ-SPPTEPTQRLPRDGHPAPSKRRP 91
>SB_57636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 417 PAGYSGTPAAPXGRPDGLPYRDGR 346
P G+SG PAAP PD L Y D +
Sbjct: 264 PGGHSGAPAAPAIGPDSL-YGDNK 286
>SB_48982| Best HMM Match : HEAT (HMM E-Value=0.78)
Length = 390
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 214 EPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVG 375
EP TR P L RS DG H D +PTE RRIE + ++R+ G
Sbjct: 327 EPATRKNP-----LYRSIF--DGFDHI-DGKPTESERRIEALQAQLQALREMAG 372
>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 13 F*ANYLSNLDNSTTDSHSDDIYPHDD 90
F +NY + +N+T + H DD HDD
Sbjct: 106 FLSNYFAAQNNNTNNHHDDDQDDHDD 131
>SB_27096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 214 EPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVG 375
EP TR P L RS DG H D +PTE RRIE + ++R+ G
Sbjct: 740 EPATRKNP-----LYRSIF--DGFDHI-DGKPTESERRIEALQAQLQALREMAG 785
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 441 PTRQXGXGPAGYSGTPAAPXGRPDGLPYRDG 349
P G G G G PA P G P+GLP +G
Sbjct: 239 PGNPGGPGYQGNHGNPAGPQG-PNGLPGPNG 268
>SB_52337| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 417 PAGYSGTPAAPXGRPDGLPYRDGR 346
P G+SGTPAAP P+ Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354
>SB_24570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 417 PAGYSGTPAAPXGRPDGLPYRDGR 346
P G+SG PAAP P+ L Y D +
Sbjct: 210 PGGHSGAPAAPAVNPESL-YGDNK 232
>SB_24169| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 591
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 417 PAGYSGTPAAPXGRPDGLPYRDGR 346
P G+SGTPAAP P+ Y D +
Sbjct: 332 PGGHSGTPAAPAVGPESF-YSDNK 354
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 22 NYLSNLDNSTTD--SHSDDIYPHDDGFREDVLLEKLEGSITWSYCW 153
NY++N DN D DD+Y DDG D +K + SY W
Sbjct: 259 NYINNYDNDNDDKPDEIDDVY-DDDGDDYDDYNDKCDDD---SYAW 300
>SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +1
Query: 217 PPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGPPXR 387
PPT S PG ST P + ++ + P R E E+ +Q P +
Sbjct: 76 PPTTSSPGNASSSGNSTTSPSNTRDGQVARNSVPFRTREARESEFTRAKQEAPQPIK 132
>SB_31574| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 450 YRAPTRQXGXGPAGYSGTPAAPXGRPDGLPYRDGR 346
+R R+ P GYSG PA P P+ Y D +
Sbjct: 257 WREAKRRFVRPPGGYSGAPAVPAVSPESF-YGDNK 290
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 371 TGCRTETADVSEPSIRLEGSVGWESLG*AAPSG 273
TGCR++ A P +R + S W + A P G
Sbjct: 1644 TGCRSDDACAVRPCMRGQCSDDWNAFKCACPEG 1676
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 371 TGCRTETADVSEPSIRLEGSVGWESLG*AAPSGRSVDRGSPLPHPGS 231
TGC VS PS + + + P+G + RGSPL P S
Sbjct: 869 TGCDVSAIPVSTPSTVQSPTSRVQHVS-TTPNGVDMRRGSPLDSPSS 914
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 271 RPDGAAHPKDSQPTEPSRRIEGSE 342
+P+G +P DSQ +EP+ + + SE
Sbjct: 243 KPEGQENPVDSQLSEPAEQAQESE 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,756
Number of Sequences: 59808
Number of extensions: 310709
Number of successful extensions: 1127
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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