Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0764
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 30 0.89
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 1.2
AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical ... 29 1.2
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 29 1.6
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 2.1
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 2.1
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.1
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.1
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.1
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 2.1
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 2.1
U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF022982-2|AAY86314.1| 130|Caenorhabditis elegans Hypothetical ... 27 4.8
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 27 6.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 6.3
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 27 6.3
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 27 6.3
AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical ... 27 6.3
AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical ... 27 6.3
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 8.3
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 0.89
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 420 GPAGYSGTPAAPXGRPDGLPYRDG 349
GPAG G P AP PDG P +DG
Sbjct: 145 GPAGPDGAPGAPG--PDGQPGQDG 166
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 444 APTRQXGXGPAGYSGTPAAPXGRP--DGLPYRDGRR 343
AP GPAG +G P AP G P DG P ++G+R
Sbjct: 165 APGPAGPEGPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical
protein F35F10.10 protein.
Length = 693
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 38 WIIVLLIATVTIFILTMTA---FGKTCFSKN*KDQLHGLTAGRTSCESA 175
W + IATV I IL +T+ FG + ++ K+ HG A +TS +A
Sbjct: 28 WKTIAKIATVVIGILFVTSPIVFGVSGVAEKNKESKHGSLANQTSANNA 76
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 420 GPAGYSGTPAAP--XGRPDGLPYRDGRR 343
GPAG +G P AP G+P G P +DG+R
Sbjct: 172 GPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 420 GPAGYSGTPAAPXG-RPDGLPYRDG 349
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 420 GPAGYSGTPAAPXG-RPDGLPYRDG 349
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 211 AEPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVG 375
A PPTR P PR+T AA PK P P R S +A + P G
Sbjct: 48 AAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAP--PVR--SASTVAAAAAAAPPG 98
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 211 AEPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVG 375
A PPTR P PR+T AA PK P P R S +A + P G
Sbjct: 177 AAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAP--PVR--SASTVAAAAAAAPPG 227
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 420 GPAGYSGTPAAP--XGRPDGLPYRDGRR 343
GPAG +G P AP G+P G P +DG R
Sbjct: 172 GPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 420 GPAGYSGTPAAPXGRP-DGLPYRDGRRFRAFD 328
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 420 GPAGYSGTPAAPXGRP--DGLPYRDGRRFRAFDSP 322
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical
protein B0244.4 protein.
Length = 309
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 2 DLGGFRPITYRIWIIVLLIATVTIFILTMTAFGKT-CFSKN*KDQLHGLTAGRTSCESAR 178
DL +PIT I ++VL++ + I I+T++ T CF KN + + T + +SAR
Sbjct: 193 DLKHCQPITNMI-MLVLILTSFLIPIVTLSFVLVTLCFYKNRSESIGDFTTDNSVSKSAR 251
>AF022982-2|AAY86314.1| 130|Caenorhabditis elegans Hypothetical
protein T23B12.11 protein.
Length = 130
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 115 REARLPESRHREDKYRHCGYQ*YYYPNSIG--NWPKTS 8
R A+ P D YR + YYYP ++G W K S
Sbjct: 84 RYAKSPRKIISRDSYRKWVMEVYYYPGAVGFSEWHKLS 121
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 413 RGIPGHQRHRXGGPTGCRTETADVSEPSIRLEGSVGWESL-G*AAPSGRSVDRG 255
RG+PG H+ P C + D + L G G + L G P+G+ + G
Sbjct: 123 RGVPGEDNHQIYEPIQCPLPSRDCIICPVGLPGYPGRDGLPGEPGPNGKPGNPG 176
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 417 PAGYSGTPAAPXGRPDGLP 361
PAG++ P AP G P G P
Sbjct: 745 PAGFAPPPGAPYGYPPGAP 763
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Frame = -1
Query: 420 GPAGYSGTPAAP--XGRP--DGLPYRDGR 346
GPAG SG P P GRP GLP GR
Sbjct: 113 GPAGPSGAPGKPGRPGRPGAGGLPGNPGR 141
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 420 GPAGYSGTPAAPXGRPDGLPYRDGR 346
GPAG +G P AP G P G P DG+
Sbjct: 192 GPAGPNGNPGAP-GSP-GKPGEDGK 214
>AC006678-2|AAK68392.2| 315|Caenorhabditis elegans Hypothetical
protein R05G9.2a protein.
Length = 315
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 29 YRIWIIVLLIATVTIFILTMTAFGKTCF 112
++ W VLLI T+FIL FG TCF
Sbjct: 21 FQRWSPVLLILLTTVFIL----FGATCF 44
>AC006678-1|AAU20842.1| 337|Caenorhabditis elegans Hypothetical
protein R05G9.2b protein.
Length = 337
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 29 YRIWIIVLLIATVTIFILTMTAFGKTCF 112
++ W VLLI T+FIL FG TCF
Sbjct: 43 FQRWSPVLLILLTTVFIL----FGATCF 66
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 426 GXGPAGYSGTPAAPXGRPD--GLPYRDG 349
G GP G +G P AP G+P G P +DG
Sbjct: 271 GPGPQGDAGAPGAP-GQPGQAGAPGQDG 297
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 426 GXGPAGYSGTPAAPXGRPD--GLPYRDG 349
G GP G +G P AP G+P G P +DG
Sbjct: 267 GPGPQGDAGAPGAP-GQPGQAGAPGQDG 293
>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
protein F59A3.1 protein.
Length = 1014
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 161 SCESARVGTTFFFSGRGPNLLRGQNPDEVGGYRGQHYDQTARLT 292
+C + + GRG NL+ + D++G G+ D+ ARLT
Sbjct: 453 ACGDNETKSEMYIRGRGKNLIAVLSFDDIG---GKAVDELARLT 493
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,648,884
Number of Sequences: 27780
Number of extensions: 234629
Number of successful extensions: 978
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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