Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0764
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    31   0.48 
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    30   0.83 
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    29   1.5  
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    29   1.5  
At1g63530.1 68414.m07182 hypothetical protein                          28   2.5  

>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +1

Query: 211 AEPPTRSEPG*GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQP 369
           A+ P  + PG     P S   P GA  PK S P  P+    GS T       P
Sbjct: 137 AQSPHAAAPG--SSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSP 187


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -2

Query: 326 RLEGSVGWESLG*AAPSGRSVDRGSPLPHPGSDLVGGSALYQKKKKWYLPAR 171
           + EGSVG ESLG ++  G S   G    + G  + GG   + ++  +Y   R
Sbjct: 735 KYEGSVGGESLGGSSVYGGSSVNGGGSVNGGGSVSGGGRKFPQRAYFYWVTR 786


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +1

Query: 295 KDSQPTEPSRRIEGSETSAVSVRQPV 372
           ++S+PTE S++I+ + ++ VS R+PV
Sbjct: 488 EESEPTETSKKIQPTSSAMVSSRKPV 513


>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +1

Query: 295 KDSQPTEPSRRIEGSETSAVSVRQPV 372
           ++S+PTE S++I+ + ++ VS R+PV
Sbjct: 511 EESEPTETSKKIQPTSSAMVSSRKPV 536


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 244 GRGLPRSTLRPDGAAHPKDSQPTEPSRRIEGSETSAVSVRQPVGP 378
           GRG+  +  RPD A +P  S  +  S  + G  T+ VSV    GP
Sbjct: 130 GRGVEWAWARPDVAVYPASSSSSSTSTVVFG--TTPVSVSSLFGP 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,600
Number of Sequences: 28952
Number of extensions: 210392
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)