Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0763
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    32   0.10 
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   8.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.7  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 331 VQELHRKGHEISVFSITHKDDPQYWTSGSYDD 426
           V++LH  GHE SV+S+    D +Y  SGS D+
Sbjct: 451 VEQLH--GHEESVYSVAFSPDGKYLVSGSLDN 480


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 286 KGTFFVSHKYTNYAAVQELHRKGH-EISVFSITHKDDPQYWTSGSYDDWLAEM 441
           + TFF++ KY++++    L  K +    V  +  KDD   + + S D  L+ +
Sbjct: 201 ENTFFIARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPL 253


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  KXESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 138
           K +SD     VELD     + DP+  VLP+   ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +1

Query: 70  DPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQ 183
           DP++ P+ +P+          A    +  G+ P +VP+
Sbjct: 260 DPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,427
Number of Sequences: 5004
Number of extensions: 65909
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)