Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0763
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    29   3.0  
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330...    29   5.2  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   5.2  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    28   6.9  
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523...    28   9.1  
09_02_0024 + 3084891-3086165                                           28   9.1  

>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 406 TSGSYDDWLAEMAGARLIIERYANITDSSIIGVRAP 513
           TS SYD   AE A A L+ E  A+  D++ I  RAP
Sbjct: 74  TSRSYDALEAERAVAELLREHGASPADAASIAARAP 109


>07_03_0251 +
           15831712-15832127,15832203-15832344,15832692-15833056,
           15833134-15833293,15833699-15834036,15834138-15834315,
           15834454-15834987,15835176-15836291
          Length = 1082

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +2

Query: 401 TGRVVRTMIGWLKWPELVL-SLNVTQISLTLL*LEFGRLTYVSVETN--NSK*WV-INTS 568
           TGRV R ++  +     +  S N T++ +TL   E+GR  YVS+  N  + K W  +   
Sbjct: 429 TGRVQRKVLYEISSAVRIFGSANDTEVCVTLWVQEYGRERYVSLAKNPASDKQWTHLKGK 488

Query: 569 YMMH 580
           +++H
Sbjct: 489 FLLH 492


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 40  SDENACTVELDPNRAPDCDPNQCVLP 117
           S EN   +++DP+    C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = -1

Query: 303 DEKRSFNLTTVRIMTITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 142
           +E +S     +    + V+Y+ I +++V+   T KC SN+ + +++  + + +C
Sbjct: 644 NELKSLFSALLEETNLAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697


>09_04_0426 -
           17451731-17451886,17451974-17452079,17452289-17452387,
           17452782-17452888,17452985-17453230,17454187-17454461,
           17454834-17454886,17455163-17455455
          Length = 444

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 40  SDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVP 180
           SD  AC+  +D   + + DP     P C  + DG   P  I P   P
Sbjct: 249 SDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVPGYDP 295


>09_02_0024 + 3084891-3086165
          Length = 424

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +2

Query: 359 KFLYFP*LIKMIRNTGRVVRTMIGWLKWPELVLSLNVTQISLTLL*LEFGRLTYVSVETN 538
           +F+Y+    K  +N  R++   +G + W  +V    V +        E G L  VS +  
Sbjct: 245 RFVYWRSNTKNNKNVERILLLDVGTMNWTVIVAPFQVGESYCVADMAEHGGLCLVSSQEQ 304

Query: 539 NSK*WV 556
           N + WV
Sbjct: 305 NLQLWV 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,855
Number of Sequences: 37544
Number of extensions: 420796
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)