Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0763
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 182 2e-46
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 114 6e-26
SB_54789| Best HMM Match : Chitin_synth_1 (HMM E-Value=1.8) 31 1.00
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 31 1.3
SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_55663| Best HMM Match : Albicidin_res (HMM E-Value=0.53) 28 9.3
SB_55832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 28 9.3
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 182 bits (444), Expect = 2e-46
Identities = 76/190 (40%), Positives = 118/190 (62%)
Frame = +1
Query: 82 APDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNR 261
A C P+ C LP+CFCS G +PGG+ P ++PQM+ +TF+ A+N +Y++IFNG +
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKK 623
Query: 262 HNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEM 441
NPNGC I+ TFFVSH+YT Y +Q L+ + HEI+ SI+H+ +W + + W E
Sbjct: 624 -NPNGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWWKNATVKQWTDEA 682
Query: 442 AGARLIIERYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPY 621
AG R I+ ++ + + G RAP+L++GG+ +F+ + D F Y+ S+ P+WPY
Sbjct: 683 AGMREILRKFGGVNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSMPTQQNNPPLWPY 742
Query: 622 TLYFRMPHKC 651
TL + +C
Sbjct: 743 TLEYASTQEC 752
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 160 bits (388), Expect = 1e-39
Identities = 62/171 (36%), Positives = 109/171 (63%)
Frame = +1
Query: 139 GTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYT 318
G +P G++P Q+PQM+ +TF+ A+N+ Y+ + N + NPNGC ++ TFFVSH+YT
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTK-NPNGCNVRATFFVSHEYT 1611
Query: 319 NYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIERYANITDSSII 498
+Y + L+ + HEI+ +I+H+ ++W +Y DW +E+ G R I++ + + + +
Sbjct: 1612 DYQLLGTLYHERHEIADHTISHRTPIEWWKKATYQDWGSEIRGMRDILKEFGGVNEKDVR 1671
Query: 499 GVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPHKC 651
G RAP+L++GG+ QF+++ D F++D+S+ P+WPYTL + C
Sbjct: 1672 GFRAPFLQIGGDNQFKVLHDHSFMFDSSMPTWRTDPPLWPYTLDYSSAQDC 1722
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 114 bits (275), Expect = 6e-26
Identities = 49/118 (41%), Positives = 71/118 (60%)
Frame = +1
Query: 76 NRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNG 255
N A CD +C P+C CS D + PGG+ P PQ++ ITF+ + V N + Y+ G
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 256 NRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDW 429
NPNGC I TFF+SH YTNY ++LH +GHE++ ++TH+ YW +Y++W
Sbjct: 84 FT-NPNGCPITATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYWEDATYEEW 140
>SB_54789| Best HMM Match : Chitin_synth_1 (HMM E-Value=1.8)
Length = 265
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 289 GTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYD---DWLAEMAGARLI 459
G + +Y N A+ E+ K + THK DP + G +D +W + +
Sbjct: 39 GMSYFRWRYVNVCAILEVESKTLSALPYPKTHKSDPVAFIRGYHDYMTEWEPALEDVYKL 98
Query: 460 IERYANITDSSIIGV 504
+ NI D + + +
Sbjct: 99 MREPTNIKDPNAVAI 113
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 289 GTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYD---DWLAEMAGARLI 459
G + +Y N A+ E+ K + THK DP + G ++ +W + +
Sbjct: 110 GMSYFRWRYVNVCAILEVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEWEPALEDVYKL 169
Query: 460 IERYANITDSSIIGV 504
+ NI D + + +
Sbjct: 170 MREPTNIKDPTAVAI 184
>SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = +1
Query: 289 GTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYD---DWLAEMAGARLI 459
G + +Y N A+ E+ K + THK DP + G ++ +W + +
Sbjct: 39 GMSYFRWRYVNVCAILEVESKTRSALPYPKTHKSDPVAFIRGYHEYMTEWEPALEDVYKL 98
Query: 460 IERYANITDSSIIGV 504
+ NI D + + +
Sbjct: 99 MREPTNIKDPNAVAI 113
>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 217 VDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRKGHE 360
VD LY F +H N +I + H Y N +LH G++
Sbjct: 337 VDTRLLYLAAFPSAKHQQNLARILNELHIKHDYNNNFLSDQLHNAGND 384
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 145 RIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNG 255
++ G +E + VT +NG N D D YE+ ++G
Sbjct: 641 KVSGWLETSVTSTSVTADWNGDSNADQEDYYEEAWDG 677
>SB_55663| Best HMM Match : Albicidin_res (HMM E-Value=0.53)
Length = 198
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +1
Query: 283 IKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYD---DWLAEMAGAR 453
+ GT V Y + A+ ++ K THK DP + G ++ +W +
Sbjct: 15 VNGTSLVGADYQSVCAILKVESKTRSALPNPKTHKSDPVAFIRGYHEYMTEWEPALEDVY 74
Query: 454 LIIERYANITDSSIIGV 504
++ NI D + + +
Sbjct: 75 KLMREPTNIKDPNAVAI 91
>SB_55832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 1 NCSVMVNQTAKXESDENACTVELDPNRAPDC-DPNQCVLPDCFCSADGTRIPGGIEPNQV 177
N V + T + ESD+N+C + D R DC ++ C + PGG+ P+
Sbjct: 102 NVVVNSSHTIRNESDDNSCITQND--REDDCLSGSEVQSQICPSTTIAGSPPGGLVPSSN 159
Query: 178 P 180
P
Sbjct: 160 P 160
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 579 IHHCSSWTRPDMALHIVFPHA 641
+H + W+R D+ALH V+ H+
Sbjct: 707 VHRATLWSRLDLALHTVYWHS 727
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 25 TAKXESDENACTVELDPNRAPDCDPNQCV 111
T + D+ C +P++ PD D ++CV
Sbjct: 407 TVPDQGDQGECVTVPEPDQVPDSDRDECV 435
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,609,077
Number of Sequences: 59808
Number of extensions: 519910
Number of successful extensions: 1215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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