Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0763
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 153 1e-37
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 153 1e-37
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 153 1e-37
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 120 1e-27
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 153 bits (371), Expect = 1e-37
Identities = 78/194 (40%), Positives = 111/194 (57%)
Frame = +1
Query: 106 CVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQI 285
C LP CFC++ G P + QVPQMV ++F+ + I+ + +F+G+ NPNGC I
Sbjct: 31 CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAI 90
Query: 286 KGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIE 465
KGTFFVSH++ NY LH HEI V SIT +D + + + W E G R +
Sbjct: 91 KGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQKGMRETLA 146
Query: 466 RYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPH 645
++ I S IIG RAP L++GG+ Q+ MM + F +D S+ L P WP TL ++
Sbjct: 147 EFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAW 203
Query: 646 KCNGNAHNCPXKSH 687
+C+G NCP +SH
Sbjct: 204 ECDG---NCPTQSH 214
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 153 bits (371), Expect = 1e-37
Identities = 78/194 (40%), Positives = 111/194 (57%)
Frame = +1
Query: 106 CVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQI 285
C LP CFC++ G P + QVPQMV ++F+ + I+ + +F+G+ NPNGC I
Sbjct: 2100 CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAI 2159
Query: 286 KGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIE 465
KGTFFVSH++ NY LH HEI V SIT +D + + + W E G R +
Sbjct: 2160 KGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQKGMRETLA 2215
Query: 466 RYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPH 645
++ I S IIG RAP L++GG+ Q+ MM + F +D S+ L P WP TL ++
Sbjct: 2216 EFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAW 2272
Query: 646 KCNGNAHNCPXKSH 687
+C+G NCP +SH
Sbjct: 2273 ECDG---NCPTQSH 2283
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 153 bits (371), Expect = 1e-37
Identities = 78/194 (40%), Positives = 111/194 (57%)
Frame = +1
Query: 106 CVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQI 285
C LP CFC++ G P + QVPQMV ++F+ + I+ + +F+G+ NPNGC I
Sbjct: 972 CRLPSCFCTSTGKIPPNNFDTKQVPQMVMLSFDDPITDRIINTLKSLFSGSIRNPNGCAI 1031
Query: 286 KGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIE 465
KGTFFVSH++ NY LH HEI V SIT +D + + + W E G R +
Sbjct: 1032 KGTFFVSHQWNNYDQSLWLHSTNHEIGVNSITRED----LSGRTQERWYKEQKGMRETLA 1087
Query: 466 RYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLGRVPIWPYTLYFRMPH 645
++ I S IIG RAP L++GG+ Q+ MM + F +D S+ L P WP TL ++
Sbjct: 1088 EFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAW 1144
Query: 646 KCNGNAHNCPXKSH 687
+C+G NCP +SH
Sbjct: 1145 ECDG---NCPTQSH 1155
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 120 bits (289), Expect = 1e-27
Identities = 87/266 (32%), Positives = 129/266 (48%), Gaps = 31/266 (11%)
Frame = +1
Query: 4 CSVMVNQTAKXESDENACTVELDPNRAPD--CDPNQCVLPDC-FCSADGTR--IPGGIEP 168
CS+ T E CT + D + A D C P + F + G R G + P
Sbjct: 1442 CSMREKCTGGATCFEGMCTCD-DHHFAEDGYCRPIEARSSKVQFVNGAGLRKTSSGCLRP 1500
Query: 169 NQVPQMVTITFNGAVNVDNIDLYEQIFNG------------------------NRHNPNG 276
++ PQ V +TF+ AVN Y+++F N NPNG
Sbjct: 1501 DETPQFVVLTFDDAVNGKTFSDYKKLFENDVLKSFKFKIKNFKKVIPNTLSLKNTINPNG 1560
Query: 277 CQIKGTFFVSHKYTNYAAVQELHRKGHEISVFSITHKDDPQYWTSGSYDDWLAEMAGARL 456
C +K TFF+SH++TNY AV L +K EI+ SI+H+ + + + WL EM G R
Sbjct: 1561 CDVKATFFISHEWTNYDAVNWLVQKNMEIASNSISHES----LENANTNRWLNEMDGQRR 1616
Query: 457 IIERYANITDSSIIGVRAPYLRVGGNKQFEMMGDQYFVYDASITAPLG--RVPIWPYTLY 630
I+ ++ + I+G+R+P L +GG+ QFEMM F++D S++A G P WP T+
Sbjct: 1617 ILAKFGGAPEEEIVGIRSPQLALGGDNQFEMMIGAEFLWDNSMSANPGIHGEPFWPQTMD 1676
Query: 631 FRMPHKCNGNAHNCPXKSHPRLGKWS 708
+++ C N +CP S P G WS
Sbjct: 1677 YQVAWDC--NEASCPKSSFP--GVWS 1698
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/68 (32%), Positives = 27/68 (39%)
Frame = -2
Query: 218 TFTAPLNVIVTI*GT*FGSIPPGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSD 39
T T+P T G+ GS PGI S E G T GS + S+ + SS
Sbjct: 895 TSTSPSPSQSTTIGSTQGSTSPGISTTSEEMTSQGSTQTPGSTGSTVTQPSTVSDSTSSG 954
Query: 38 SXFAVWFT 15
S V T
Sbjct: 955 STVTVGST 962
>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical protein
F40F12.5 protein.
Length = 1144
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1
Query: 361 ISVFSITHKDDPQYWTSGSYDDWLAEMAGARLIIERYANITDSSIIGVRAPYLRVGGNKQ 540
I + H D QY DDWL A ++ ++ER+ + + + +AP + + Q
Sbjct: 872 IKLIGQNHAKDSQYLVPIVVDDWLGGAATSQHLLERH--MRSAQVTFAKAPPVLI---MQ 926
Query: 541 FEMMGDQYFVYDASITAPLGRVPIWPY 621
G Q V+D + PL + I P+
Sbjct: 927 LPRYGQQK-VFDKIL--PLETIDITPF 950
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 46 ENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRI 150
E++C P P+C PN C P C C R+
Sbjct: 337 EHSCDWTHFPETTPNC-PNSCGTPRCICKEGFVRM 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,362
Number of Sequences: 27780
Number of extensions: 385317
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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