Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0762
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    34   0.025
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   5.0  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   5.0  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   5.0  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    26   5.0  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    25   8.7  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 172 KAICRRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNLDQLYDTVEVMDTGLSEHE 351
           KAI  R  +  K+  V +A LAT ++L++   D  I G   +++L D +  ++  LSE +
Sbjct: 277 KAILSRVEELAKKYNVSMATLATAWSLHKG--DYPIVGISKVERLKDALAAVELKLSEED 334

Query: 352 SRILSQ 369
            + L +
Sbjct: 335 IKYLEE 340


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 166 RHWLDAMAGDLC 131
           +HWLD  AGD+C
Sbjct: 310 KHWLDKRAGDVC 321


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 480 CLDILFVSFLIFNFNNSLYST 542
           CL  L+  + IFNF N  +ST
Sbjct: 194 CLGTLYGQYCIFNFKNGSFST 214


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 497 KQNI*TTHKENHFFDNSLSLFLYNGSSTLSQCN 399
           K+N  T +KEN F     S F ++ SST +  N
Sbjct: 187 KENTLTLNKENEFSSKDDSNFAFHNSSTKTTIN 219


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 31  TLFDNRLQNYISFFKSKGVGVINAAATGMGLLTNKGPQPWHPASDDIKAICRRASDYCKE 210
           TL  N  ++      ++   VIN   +G G +  KG  P  P     + + RRA +  K+
Sbjct: 80  TLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQ 139


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 91  VINAAATGMGLLTNKGPQPWHPASDDIKAICRRASDYCKE 210
           VIN   +G G +  KG  P  P     + + RRA +  K+
Sbjct: 100 VINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQ 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,121
Number of Sequences: 5004
Number of extensions: 53916
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)