Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0762
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306...    86   2e-17
06_03_1160 - 28086631-28086688,28086714-28086830,28087057-280871...    30   1.7  
11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750     30   2.3  
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203...    29   3.9  
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596...    29   5.2  
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424...    28   6.9  
11_03_0034 - 9124414-9124599,9124677-9124769,9125022-9125098,912...    28   9.1  

>12_02_0351 -
           17829874-17830005,17830250-17830267,17830544-17830672,
           17831037-17831336,17831447-17831675,17831762-17831989,
           17832380-17832645
          Length = 433

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 40/101 (39%), Positives = 61/101 (60%)
 Frame = +1

Query: 1   ISTILSYSKSTLFDNRLQNYISFFKSKGVGVINAAATGMGLLTNKGPQPWHPASDDIKAI 180
           +  ILSY    + D  L + + + KSKGVGVI+A+   MGLLT+ GP  WHPA  ++K  
Sbjct: 284 VDVILSYCHYGINDTALVDLLPYLKSKGVGVISASPLAMGLLTDNGPPEWHPAPKELKLA 343

Query: 181 CRRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNLDQ 303
           CR A+D+CK++   + +LA  ++L    I T + G  + +Q
Sbjct: 344 CRAAADHCKKKGKNITKLAMQYSLMNNEISTVLVGMNSPEQ 384


>06_03_1160 -
           28086631-28086688,28086714-28086830,28087057-28087183,
           28087273-28087456,28087558-28087784,28087907-28088021
          Length = 275

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 375 LHLTQDPRLVLRESCIHNLDSVVQLIQVEETTNVCVYSRLVQCKPGRQASQFHLTFLAVI 196
           LH T DP+L    + +H+    V L  +++  +  V+    +   GR +  FH +  +V+
Sbjct: 172 LHHTSDPKLYSLLASVHSRFGCVPLAHIQDVCDAHVFLMETEQADGRLSKDFHGSNPSVV 231

Query: 195 RS 190
            S
Sbjct: 232 SS 233


>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
          Length = 422

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -1

Query: 330 IHNLDSVVQLIQVEETTNVCVYSRLVQCKPGRQASQFHLTFLAVIRSPSAYSLDIVTGW 154
           IH L +   ++     T +C+ S    CK      + +   L  + SP    +DIVTGW
Sbjct: 166 IHGLPNCCGVVDTTHIT-MCLSSAEPNCKVWLDHEKNYSMVLQAVISPDMRFMDIVTGW 223


>02_01_0304 +
           2037718-2037939,2038169-2038384,2038862-2039329,
           2039419-2040171
          Length = 552

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 322 VMDTGLSEHESRILSQVQARFFDKDTLHWDNVEL 423
           V+D    E E  I++ V ++ F+K+  H D++E+
Sbjct: 194 VLDAAAYEKERSIMNSVMSKLFEKENDHLDSMEI 227


>11_06_0538 +
           24759030-24759379,24759380-24759488,24759604-24759692,
           24760179-24760287,24760370-24760471,24760564-24760628,
           24760830-24760936,24761023-24761087,24761163-24761217,
           24761305-24761465
          Length = 403

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/85 (21%), Positives = 38/85 (44%)
 Frame = +1

Query: 130 NKGPQPWHPASDDIKAICRRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNLDQLY 309
           ++G   ++  +  +KA  +       +  +  A LA  F L  P + + + G   + QL 
Sbjct: 314 SEGESRYNLQNPKMKAAVKEYVKISAKHGISPAILAVAFVLRHPLVSSAVFGATEISQLT 373

Query: 310 DTVEVMDTGLSEHESRILSQVQARF 384
           + ++     LSE     +++V AR+
Sbjct: 374 EVLQATRIHLSEEIVAEINEVHARY 398


>10_08_0048 -
           14441540-14441620,14442044-14442111,14442275-14442493,
           14442506-14444508,14447541-14448410,14448533-14448576,
           14449920-14450093
          Length = 1152

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 16  SYSKSTLFDNRLQNYISFFKSK 81
           S +KS   D+++ NYISFFK K
Sbjct: 743 SSNKSVCTDSQMLNYISFFKDK 764


>11_03_0034 -
           9124414-9124599,9124677-9124769,9125022-9125098,
           9125725-9126401,9126423-9126653,9127760-9127826,
           9127843-9127993
          Length = 493

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 325 MDTGLSEHESRILSQVQARFFDKDTLHWDNVELPLYKN 438
           M+T ++E + +I++ V     D   L WD  E+ +++N
Sbjct: 241 METTVAEQDVQIVASVGTDIEDVAGLEWDGTEIEVFEN 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,218
Number of Sequences: 37544
Number of extensions: 321538
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)