Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0762
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)                  31   1.00 

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
 Frame = +1

Query: 73  KSKGVGVINAAATGMGLLTNKGPQPWHPASDDIKAICRRASDYCKERKVELARLATWFTL 252
           K + VGVINA+   MGLL+++GP  WHPA+++ +  CR A+ YCK + V++++LA  F+L
Sbjct: 101 KEQEVGVINASPISMGLLSDRGPPDWHPANENTREKCREAALYCKSQGVDISKLAMHFSL 160

Query: 253 NQPGIDTNICGFFNLDQLYDTVEVM-DTGLSEHESRILSQVQAR-FFDKDTLHWDNVELP 426
           ++ GI T +    +L+ L   ++++    L++ E  +LS V    F     L W+ VE+ 
Sbjct: 161 SKEGIPTTLVSTASLENLQKNIDIVRQAALTDKEKDVLSYVMNNIFLPAGNLSWEGVEVD 220

Query: 427 LYKNKLNELSKK*FSL 474
            Y++ L  L    F++
Sbjct: 221 RYRDALQNLHNMVFNV 236


>SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)
          Length = 595

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 426 RQLDVVPM*CIFVEEPRLHLTQDPRLVLRESCIHNLDSVVQLIQVEETT 280
           +QL +  M   F+E+     +QD  L   + C   LDS   LI+V+E++
Sbjct: 464 QQLTITQMFSRFIEQRSFVTSQDALLAFFDECQEKLDSPKPLIEVDESS 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,025
Number of Sequences: 59808
Number of extensions: 382892
Number of successful extensions: 1004
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)