Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0762
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    29   0.047
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        29   0.047
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.57 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.57 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.1  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 184 RRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNL 297
           +  S  CK  KV L  ++ WF    P +  N  G FNL
Sbjct: 268 QNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNL 305


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 29.1 bits (62), Expect = 0.047
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 184 RRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNL 297
           +  S  CK  KV L  ++ WF    P +  N  G FNL
Sbjct: 18  QNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNL 55


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 202 CKE-RKVELARLATWFTLNQP 261
           C E +K  L +LA WFT N+P
Sbjct: 78  CTEIQKQNLDKLAEWFTTNEP 98


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 202 CKE-RKVELARLATWFTLNQP 261
           C E +K  L +LA WFT N+P
Sbjct: 78  CTEIQKQNLDKLAEWFTTNEP 98


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 268 LFQAGSM*TRSPSEPVPPYVP 206
           LF+AGS       EP+PP  P
Sbjct: 29  LFKAGSAEQPKEQEPLPPVTP 49


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 255 VQCKPG--RQASQFHLTFLAVIRSPSAYSLDIVTGWMPWL-GTFVRQQTHSSCSCINNPN 85
           V+C  G  R++ +     L  +  P   S    T  M     T VR   +S+CS  N+P+
Sbjct: 297 VRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,094
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)