Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0762
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH) ide...    84   1e-16
At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) famil...    34   0.12 
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    29   2.5  

>At4g33670.1 68417.m04783 L-galactose dehydrogenase (L-GalDH)
           identical to L-galactose dehydrogenase [Arabidopsis
           thaliana] GI:16555790; similar to L-fucose dehydrogenase
           [Pseudomonas sp.] GI:829054; contains Pfam profile
           PF00248: oxidoreductase, aldo/keto reductase family
          Length = 319

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
 Frame = +1

Query: 1   ISTILSYSKSTLFDNRLQNYISFFKSKGVGVINAAATGMGLLTNKGPQPWHPASDDIKAI 180
           +  ILSY    + D+ L + + + KSKGVGVI+A+   MGLLT +GP  WHPAS ++K+ 
Sbjct: 176 VDVILSYCHYGVNDSTLLDLLPYLKSKGVGVISASPLAMGLLTEQGPPEWHPASPELKSA 235

Query: 181 CRRASDYCKERKVELARLATWFTLNQPGIDTNICGFFNLDQLYDTV-EVMDTGLSEHESR 357
            + A  +CK +  ++ +LA  ++L    I + + G  ++ Q+ + V  V +      +  
Sbjct: 236 SKAAVAHCKSKGKKITKLALQYSLANKEISSVLVGMSSVSQVEENVAAVTELESLGMDQE 295

Query: 358 ILSQVQARFFDKDTLHW 408
            LS+V+A       L W
Sbjct: 296 TLSEVEAILEPVKNLTW 312


>At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) family
           protein similar to tRNA-glutamine synthetase [Lupinus
           luteus] GI:2995455; contains Pfam profile PF03950: tRNA
           synthetases class I (E and Q), anti-codon binding domain
          Length = 170

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
 Frame = +1

Query: 160 SDDIKAICRRASDYCKERKVELARLATWFTLNQPGID---TNICGFFNLDQLYDTVEVMD 330
           +DD K +C    +Y  E+K++   +  W     PG +     +C F NL    +  E+ D
Sbjct: 68  ADDTKTVCEIYVEYDPEKKIKPKGVLHWVPEYSPGKEPTKVEVCSFENLFNSENPAELND 127

Query: 331 TGLSEHESRILSQVQARFF--DKDTL 402
             L++    I  Q+Q+ ++  DKD++
Sbjct: 128 DWLTD----INPQLQSGYYTVDKDSI 149


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
 Frame = +1

Query: 199 YCKERKVELARLATWFTLNQPGIDT-------NICGFFNLDQLYDTV--EVMDTGLSEHE 351
           + +  ++E    ATW T++  GI +       +I    NL ++ D +   ++D GL E  
Sbjct: 129 FSRSHELEWQHQATW-TVSGVGISSFRVLQSSSISLLRNLKRISDGIFKPILDNGLREAT 187

Query: 352 SRILSQVQARFFDK-DTLHWDNVELPL 429
           +RI  Q     FD+  TL W N E+PL
Sbjct: 188 TRIGRQ---EIFDRRTTLTWKNSEVPL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,839
Number of Sequences: 28952
Number of extensions: 267492
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)