Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0761
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 261 6e-71
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 163 3e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 155 8e-39
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 127 2e-30
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 3.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.4
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 4.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 6.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 261 bits (640), Expect = 6e-71
Identities = 121/184 (65%), Positives = 141/184 (76%)
Frame = +1
Query: 4 PAPWXSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 183
P +V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+EAE+CD
Sbjct: 70 PGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDA 129
Query: 184 LQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSV 363
LQGFQ KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSM 189
Query: 364 HQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD 543
HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+D
Sbjct: 190 HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSD 249
Query: 544 LRKL 555
LRKL
Sbjct: 250 LRKL 253
Score = 82.6 bits (195), Expect = 5e-17
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +2
Query: 554 LAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAXNMM 697
LAVNMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM
Sbjct: 253 LAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 163 bits (395), Expect = 3e-41
Identities = 74/177 (41%), Positives = 109/177 (61%)
Frame = +1
Query: 22 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQX 201
VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+ A++C LQGF
Sbjct: 82 VRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLV 141
Query: 202 XXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 381
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N
Sbjct: 142 FHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDN 201
Query: 382 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRK 552
+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G LN DL +
Sbjct: 202 SDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNE 258
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 563 NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAXNMM 697
N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M
Sbjct: 262 NLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 155 bits (375), Expect = 8e-39
Identities = 71/175 (40%), Positives = 104/175 (59%)
Frame = +1
Query: 22 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQX 201
VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +R+ A++C LQGF
Sbjct: 78 VRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLV 137
Query: 202 XXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 381
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++
Sbjct: 138 FHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDL 197
Query: 382 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 546
D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G LN DL
Sbjct: 198 ADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDL 252
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 548 ASLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAXNMM 697
A N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M
Sbjct: 253 AEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 127 bits (306), Expect = 2e-30
Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Frame = +1
Query: 19 SVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQG 192
++ S +G ++ P+N + ++G AGNNWA G Y+ + + ++D++ +EA+ D L+G
Sbjct: 76 NILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEG 134
Query: 193 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQ 369
F ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +
Sbjct: 135 FSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKR 194
Query: 370 LVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 546
L N D +DN AL I L PT+ N LVS MS TT LR+PG +N DL
Sbjct: 195 LTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDL 253
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 551 SLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAXNMM 697
S+ +++P PR HF + + P T++ ++ +A+ TV ++ +++ N M
Sbjct: 255 SIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQM 306
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 554 SLRRSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQI 423
+LR NR ++ P ++ R R YVG +F RKQI
Sbjct: 679 ALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQI 722
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 132
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/44 (27%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -2
Query: 138 IDELSTLRVVSLGPVVAGAGLSEDEVVRTE-DLSERSRADRVPW 10
+DE S+L++ ++ G S+D++V++ +LS+ S +++P+
Sbjct: 22 VDEESSLKIEKFRVLIFGKDNSQDDLVKSVFNLSKLSEKEKMPF 65
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 100 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 189
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 173 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 36
++A+ RTTS T+ +PS L P P + S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 52 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 183
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,812
Number of Sequences: 5004
Number of extensions: 48069
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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