Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0760
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   1.6  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   3.7  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   6.4  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   8.5  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 164 GSDRSLLKN*RGLRLGIFSETIFSRCMFLIRLAFIDRKENLLHF 295
           G D+ L    + + LGIFS+ +  + +FL  L    + EN+L F
Sbjct: 556 GKDKELSNILKIVYLGIFSQNVQIQLIFLDELLKSKKSENVLKF 599


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 126 VYIPMKFSKMLGLDPTGVY*KTSVVCDWEY 215
           VY+  + S+MLGL P  V   T     W++
Sbjct: 567 VYVDTRLSRMLGLPPLWVAGMTPTSVPWQF 596


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 271 SEGKFTSFSSKEGLLLKCSS*TPRECTEDFVTITVYVIQ*YKMGLDPT 414
           +EG +     +  LLL+ SS T +EC E+   + +  +  Y   LD T
Sbjct: 145 NEGNYVGLPKEWILLLQSSSITKQECMEEPKAV-IQALDFYSKQLDTT 191


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 454 HFKLNTKKSFNIHRSGPSPFCITESHKQ*WSQN----LQYTPVGSRTSILAII 308
           + K    +S++     PSP  I E  K  + QN    L  +P+ +R+ ++AI+
Sbjct: 58  YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPVLLQSPMSTRSHLMAIL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,975
Number of Sequences: 5004
Number of extensions: 48536
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)