Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0760
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)                   29   2.9  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   6.7  

>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 443

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 519 CYICYVNNSKCFAAWTPRACTKLKKKKK 602
           CY      +KCF AWT    T L ++KK
Sbjct: 304 CYQIQPETTKCFIAWTKSLRTILHRRKK 331


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 274 EGKFTSFSSKEGLLLKCSS*TPRECTEDFVTITVYVI 384
           EG FTS S+ E  + +C + +  E   +F  ITV VI
Sbjct: 284 EGTFTSLSAIEKYIKRCETKSVYEGRVEFTKITVKVI 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,510
Number of Sequences: 59808
Number of extensions: 317925
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)