Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0760
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26540.1 68414.m03234 agenet domain-containing protein contai...    30   1.0  
At4g23950.1 68417.m03444 expressed protein ; expression supporte...    29   3.1  
At1g03300.1 68414.m00308 agenet domain-containing protein contai...    27   7.2  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    27   9.6  
At3g20820.1 68416.m02633 leucine-rich repeat family protein cont...    27   9.6  

>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 36  LRTHQLWTSKFWIPPEFTRNTK 101
           LRTH +WT   WI PE   + K
Sbjct: 130 LRTHLIWTGGTWIQPEIEESNK 151


>At4g23950.1 68417.m03444 expressed protein ; expression supported
           by MPSS
          Length = 466

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 326 EHFSNNPS-FD-ENEVNFPSDQ*TPVGS 249
           EH+S+NP  F     ++FPSD  TP GS
Sbjct: 205 EHYSSNPKEFSLSGSLSFPSDMWTPAGS 232


>At1g03300.1 68414.m00308 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 670

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 33  HLRTHQLWTSKFWIPPEFTRNTK 101
           HLR H  WT   W+ PE    +K
Sbjct: 125 HLRAHLDWTGSEWVQPEVRELSK 147


>At4g27010.1 68417.m03885 expressed protein  ; expression supported by
            MPSS
          Length = 2535

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +3

Query: 75   PPEFTRNTKFKSFLMKFVYIPMKFSKMLGLDPTGVY*KT---SVVCDWEYFLKRYFQDVC 245
            P E T   KF  +L   V +   +SK    DPT +  KT   +++   EYF KR  +D  
Sbjct: 2336 PQEETMVAKFLRWLSASVILGKSYSKASDSDPTFLS-KTKPETLLTSLEYFKKRNLEDSM 2394

Query: 246  S*SDWRLLIGRKIYFIFIERRIIAKMLVLDPTGVY 350
              S+   +IG  I  + +++ +    + L P+ V+
Sbjct: 2395 QNSEH--IIGEVI--VHLQQFLSTNYMFLLPSVVF 2425


>At3g20820.1 68416.m02633 leucine-rich repeat family protein
           contains similarity to Cf-2.1 [Lycopersicon
           pimpinellifolium] gi|1184075|gb|AAC15779; contains
           leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 365

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -2

Query: 462 RMNILSLTLRSLSIYTGRVQAHFVS---LNHINSNGHKIFSTLPWGLGR 325
           R+ +LS  L S +  TGR+     +   L  ++ +G++++ T+P  LGR
Sbjct: 197 RLKMLSRALLSGNRITGRIPESLTNIYRLADVDLSGNQLYGTIPPSLGR 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,486
Number of Sequences: 28952
Number of extensions: 239307
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)