Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0757
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   1.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   4.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 143 KQDRTRKRHQRX**TQYNKYPKFVFRQPVMVNA 241
           +  R R+RHQR     Y    +   R+PV+VNA
Sbjct: 267 RSSRRRRRHQRLIPIIYETLEQMDLRKPVLVNA 299


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 163 FSRPILLREWSSYTAHGSNHFVTSNPIRTKLLTQKKTXSIKLYSTRS 23
           F+R +   + SSY+    +H  + NP  + L T+K+    +L+S ++
Sbjct: 54  FARSLQNSQSSSYSLPPFDHPPSKNPTSSSLSTRKRWRQKRLWSFKN 100


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 193 ILSLLXPLVTFSRPILLREWSSYTAHGSNHFVTSNPIRTKLLTQK 59
           +LS+L PL+   + ++     +  A GS     ++ ++TK+L Q+
Sbjct: 235 VLSVLLPLLEKRQLVIPSRGETIYAKGSFQMFATSSMKTKILGQR 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,677
Number of Sequences: 5004
Number of extensions: 31257
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)