Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0757
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.25 
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    24   0.77 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              24   0.77 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              24   0.77 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 363 NNRTTKCTRKYKTAKFT 413
           NN TT CT +Y T  FT
Sbjct: 185 NNYTTDCTIEYSTGNFT 201


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 211 CISSTRNGKRKRRTPLATQQIIDL 282
           C        RK RTP  TQQ++ L
Sbjct: 1   CTLRKHKPNRKPRTPFTTQQLLSL 24


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +3

Query: 285 LTCICFTLRVNKKY---CKIT*SSRFFFLNNRTTKCTRKYKTAK 407
           LT I     V KK    C +   +  +   N+  KC  KYKT K
Sbjct: 87  LTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMK 130


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +3

Query: 285 LTCICFTLRVNKKY---CKIT*SSRFFFLNNRTTKCTRKYKTAK 407
           LT I     V KK    C +   +  +   N+  KC  KYKT K
Sbjct: 87  LTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKYKTMK 130


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 360 LNNRTTKCTRKYKTAKFT 413
           + N T  CT+ Y T  FT
Sbjct: 215 VKNYTADCTQVYSTGNFT 232


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 214 ISSTRNGKRKRRT 252
           +   RNGKRKR++
Sbjct: 208 LEGPRNGKRKRKS 220


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 263 HNRSLTSANMY 295
           HNR++T+ NM+
Sbjct: 712 HNRNVTTCNMF 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,191
Number of Sequences: 438
Number of extensions: 2282
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)