Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0757
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ...    28   3.1  
At2g27900.1 68415.m03382 expressed protein                             27   7.1  

>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
           identical to DNA Helicase [Arabidopsis thaliana]
           GI:11121445
          Length = 705

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -2

Query: 148 LLREWSSYTAHGSNHFVTSNPIRTKLLTQKKTXSIKLYSTRS 23
           +L+E   +T + +N +VT  P+  +LL  +KT  ++  S ++
Sbjct: 544 VLKEEFQHTPYSTNAYVTMGPLANQLLQGRKTIKMETSSRQT 585


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 128  LHRTRLKSLCHIQPYSDQTLNSK 60
            LHRT  + L H+  Y D+  NSK
Sbjct: 946  LHRTTARILLHVNGYVDRIANSK 968


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,743,169
Number of Sequences: 28952
Number of extensions: 151656
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)