Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0756
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0291 - 22837412-22838128 30 1.4
02_02_0730 - 13466806-13466865,13466922-13467029,13467897-134679... 29 4.2
11_04_0327 + 16420327-16420473,16420618-16420663,16421561-164217... 28 5.6
04_03_0677 - 18600568-18600609,18601241-18601307,18601511-186015... 28 5.6
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 28 5.6
10_01_0114 + 1423051-1424319 28 7.4
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 28 7.4
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 28 7.4
12_02_0504 - 19771191-19772134,19772210-19774892 27 9.8
10_01_0113 + 1410151-1411416 27 9.8
08_01_0338 + 3000897-3002447 27 9.8
>03_05_0291 - 22837412-22838128
Length = 238
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 277 SRNPLARSAFQCE*YSRRERPRRWNRDTAGVPPPRDLE 164
+R P R E +S+R+R RR +RD A PPP E
Sbjct: 27 ARKPQQRCG-GAEGWSKRKRSRRRHRDRAAAPPPHGSE 63
>02_02_0730 -
13466806-13466865,13466922-13467029,13467897-13467910,
13468234-13468389,13468474-13468599,13468660-13468842,
13469103-13469198,13469290-13469338
Length = 263
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 205 SNDVDVPVGSIIHTGMQNERGGYENDCSLARISENHYMM 321
+N V P+G I + + + R + NDCS + NH ++
Sbjct: 105 TNYVKAPLGDITNVSVDDLRRCHVNDCSTLQQGSNHALL 143
>11_04_0327 +
16420327-16420473,16420618-16420663,16421561-16421702,
16423700-16423779,16424487-16424677
Length = 201
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +1
Query: 64 KPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSIIH 243
K W + E A + GL +F+ I S + L Y+C +D D P G +I
Sbjct: 15 KASWL-GMSSEGGAAKFLSGLPSRGNFSSISASST---LGRLRVYVCEHDTDPPEGQVIE 70
Query: 244 TGMQN 258
T N
Sbjct: 71 TDTTN 75
>04_03_0677 -
18600568-18600609,18601241-18601307,18601511-18601596,
18602411-18602471,18602472-18602573,18602646-18602750,
18604031-18604109,18604804-18604963
Length = 233
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 100 WACRERVGLSDYSS-FTKIDIQSQG-REVVELL 192
WACR +G+ +SS F + D QG REV+ +L
Sbjct: 146 WACRSEIGVGLFSSDFDESDDPGQGFREVIIVL 178
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 452 LVNGPMTQMAVYIDVTSERVTEPLLGRCRFSHTLQRVCWIVGAI 321
L+ P T + Y D + PLL F L R WI+G I
Sbjct: 306 LLWSPFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMI 349
>10_01_0114 + 1423051-1424319
Length = 422
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 76 FDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVV 183
F+AV W CR RV +SD + T + I R+ V
Sbjct: 248 FEAVAAVMWRCRTRVVMSDPDAPTVLAITVNSRKYV 283
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 166 QGREVVELLQYLCSNDVDVPVGSIIHTGMQNERGGYENDCSLARISENHY 315
QG+++++ L S +P+ ++ N R YE D + +S H+
Sbjct: 122 QGQQMLQQLTSSSSYGTTIPIPDVVQNASGNTRALYEMDNTSGPMSNGHH 171
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 440 PMTQMAVYIDVTSERVTEPLLGRCRFSHTLQRVCWIVGAI 321
P T + Y D + PLL F L R WI+G I
Sbjct: 311 PFTFLLGYKDPEPSKANLPLLHEWHFRSGLDRYIWIIGMI 350
>12_02_0504 - 19771191-19772134,19772210-19774892
Length = 1208
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 298 ISENHYMMIAPTIQQTRCKVWLKRHLPSNGSVTLSDVTSMYTAICVM 438
+ + Y+ T+ C+ RHLP+NG L +TS+ C M
Sbjct: 904 LEKQQYLQSLKTLLVRHCENL--RHLPANGLTELHHLTSLEIVACPM 948
>10_01_0113 + 1410151-1411416
Length = 421
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 76 FDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVV 183
F+AV W CR RV +SD + T + I R+ V
Sbjct: 247 FEAVAAALWRCRTRVVMSDPDAPTVLAITVNSRKHV 282
>08_01_0338 + 3000897-3002447
Length = 516
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 165 SRSRGGGTPAVSLFQRRGR--SRREYHSHWNAER 260
SR RGGG PA +L GR S Y W A R
Sbjct: 111 SRPRGGGGPASALLSSGGRNVSSAPYGPTWRALR 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,466
Number of Sequences: 37544
Number of extensions: 336549
Number of successful extensions: 1007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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