Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0756
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57131| Best HMM Match : GCV_T (HMM E-Value=7e-25) 128 3e-30
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 1e-23
SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17) 66 2e-11
SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40) 44 1e-04
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 29 2.5
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_25983| Best HMM Match : IncA (HMM E-Value=0.17) 29 3.3
SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19) 29 3.3
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 28 7.6
>SB_57131| Best HMM Match : GCV_T (HMM E-Value=7e-25)
Length = 537
Score = 128 bits (310), Expect = 3e-30
Identities = 63/172 (36%), Positives = 96/172 (55%), Gaps = 1/172 (0%)
Frame = +1
Query: 64 KPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVE-LLQYLCSNDVDVPVGSII 240
KP +F VQ EY AC V L D +S +I S E +Q LC+ DV VP+G I+
Sbjct: 198 KPAFFRNVQVEYAACHNSVALVDMTSVGLFEISSADPASCEQFMQTLCARDVGVPIGHIV 257
Query: 241 HTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKRHLPSNGSVTLSDVTSMY 420
T M N+RGGYE +C++AR +EN Y+++ PT + W+ RH+P+ S+TL D+ S +
Sbjct: 258 QTAMLNKRGGYELECTVARTAENRYIIMVPTAHTVLAQNWISRHIPNRSSITLRDIQSGF 317
Query: 421 TAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAMNLTHTG 576
+ V+GP + ++P TFKE+ +G A+ ++A T+ G
Sbjct: 318 VVLGVLGPMS-AELLQGFTTTDLTSDYPIDTFKELSLGFASDVKAFKRTNVG 368
>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 106 bits (255), Expect = 1e-23
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Frame = +1
Query: 55 TFGKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQG-REVVELLQYLCSNDVDVPVG 231
TFG+PPW V++EY AC+E VGL D +S ++I+SQ V+LLQ LC +D D+P+
Sbjct: 256 TFGRPPWLANVEQEYRACKEGVGLVDLTSTGILEIKSQDVHGCVDLLQKLCIDDADIPIN 315
Query: 232 SIIHTGMQNERGGYENDCSLARISEN-------HYMMIAPTIQQTRCKVWLKRHLPSNGS 390
++HT M N GG+E C+L R N ++++A R W+ RH +
Sbjct: 316 GVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLLLAKPSYLVRAISWVTRHAADD-- 373
Query: 391 VTLSDVTSMYTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLA 540
VT++D+ S + + V+GP +R FP T + ID+ A
Sbjct: 374 VTVTDLQSNCSILGVLGPTSRDLMQPLTQTPLGIEEFPVDTCQVIDIDFA 423
>SB_58622| Best HMM Match : GCV_T (HMM E-Value=6e-17)
Length = 515
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Frame = +1
Query: 55 TFGKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGS 234
+F + WF+ V RE RVG+ D S F K ++ G++ L + +N + +G+
Sbjct: 259 SFRRTNWFEPVGREVDLVLNRVGVIDVSPFGKFEV--TGKDTKIFLDVMFANSLP-KIGT 315
Query: 235 IIHTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKRHLPSNG-SVTLSDVT 411
+ + RG + +++ + E+HY+++ + + WLK+H G VT ++T
Sbjct: 316 TNISHLLTPRGRVYAEMTVSALGEDHYLLLTGSGSEFHDLRWLKKHATEGGYDVTFENLT 375
Query: 412 SMYTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAMNLTHTGXAG 585
+ V GP R F F K+I++ +RA+ +++TG G
Sbjct: 376 DKVDTLGVAGPKARDVLQKLTTEDMSHGKFKFLNVKDIEMA-GVPVRAIRISYTGELG 432
>SB_1356| Best HMM Match : GCV_T (HMM E-Value=5.1e-40)
Length = 1006
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 14/191 (7%)
Frame = +1
Query: 55 TFGKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGS 234
TF PP D + E ACR + + S F K I G + + + ++ + ++ GS
Sbjct: 207 TFDFPPHHDIIGAEAKACRSNAAVFNMSYFAKYYI--SGLDAQKAVDWIFTANMQKKPGS 264
Query: 235 IIHTGMQNERGGYENDCSLARI--------------SENHYMMIAPTIQQTRCKVWLKRH 372
+ +T M N+ GG E D +++ + Y+ I + Q
Sbjct: 265 VTYTCMCNKDGGVEADLTVSVLEPGDGSTAALPHFDGNGFYVAIGGGVGQHSYSHLTNVI 324
Query: 373 LPSNGSVTLSDVTSMYTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIR 552
V L +VT+ + V GP +R F F T K I++ + +R
Sbjct: 325 AEKGFDVKLEEVTNDLGMLSVQGPKSREILSKLTDADLSDEAFYFSTHKMINIA-GHPVR 383
Query: 553 AMNLTHTGXAG 585
A+ LT G G
Sbjct: 384 ALRLTFVGELG 394
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 194 CRSSTTSRP*DCMSILVKEE*SERPTRSRHAQYSRCTAS-NQGGFPKVLVCAILNGRGFS 18
C +R DC S L K + ++P SR C A+ +G + K C++ G G
Sbjct: 175 CGGGVQTRRIDCSSSLTKCDHRKKPVESRRCNTEACPATWREGPWSK---CSVTCGEGIQ 231
Query: 17 L 15
L
Sbjct: 232 L 232
>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1916
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +3
Query: 510 HVQGDRRRSGQWDSGDESDAHRXSWDMCSIYLTS 611
H DRRR GQ DSGD + SW S L S
Sbjct: 714 HNGRDRRRYGQPDSGDVRQSRTASWRRLSDVLGS 747
>SB_25983| Best HMM Match : IncA (HMM E-Value=0.17)
Length = 385
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 127 SDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSIIHTGMQNERGGYENDCSLARISE 306
S+ F + +G++ V L + + S +++V + TG+Q E G Y+ + SL R S
Sbjct: 113 SEKEKFESAAKEVEGKKSV-LEKKVKSMEIEVRQQNAKLTGLQKEGGKYKTEVSLLRQSI 171
Query: 307 NH 312
NH
Sbjct: 172 NH 173
>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
Length = 618
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 294 SQAAVILVTPSLVLHSSVNDTPDGNVHVVGTEILQEFHHL 175
S +I+ T + H V +TP G +++ ++LQE+ H+
Sbjct: 229 SATKMIIETALFLAHLQVPNTPGGGMNLSPLDLLQEYKHV 268
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -3
Query: 363 QPHLAARLLDRRSYHHVMVLRYPSQAAVILVTPSLVLHSSVNDTPDGNVHVVGTEILQE 187
QPHL+ARL +Y +V RYP T + VL+ P+ N + G I ++
Sbjct: 557 QPHLSARLSLPETYSSSLVTRYPLSCQTASTTRT-VLYQDCTYPPE-NRELQGYNIYKD 613
>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 525 RRRSGQWDSGDESDAHRXSWDMCSIYLTSLALH 623
RRRS +W S +S ++ +CS+ + A H
Sbjct: 97 RRRSSRWSSKCKSSTRTIAYMLCSVLVMCFARH 129
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -2
Query: 226 RERPRRWNRDTAGVPPP-RDLETVCLSW 146
+ RP RW R PPP +D+ C W
Sbjct: 585 QRRPYRWKRAKPTTPPPCKDINLKCDEW 612
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,697
Number of Sequences: 59808
Number of extensions: 392178
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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