Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0756
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA ...   276   2e-74
AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p pro...   270   8e-73

>AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA
            protein.
          Length = 939

 Score =  276 bits (677), Expect = 2e-74
 Identities = 125/189 (66%), Positives = 150/189 (79%), Gaps = 2/189 (1%)
 Frame = +1

Query: 25   PRPFKIAHTRTFGKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLC 204
            PR F+IA TRTFGKPPWFD V  EY ACRER+G++DYSSFTK D  S+G EVV+LLQYLC
Sbjct: 524  PR-FRIAQTRTFGKPPWFDHVASEYRACRERIGIADYSSFTKYDFWSKGNEVVDLLQYLC 582

Query: 205  SNDVDVPVGSIIHTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKRHLPSN 384
            SNDVDV VGSIIHTGMQN  GGYENDCSLAR+SE HYMMIAPTIQQTR   W+++H+P++
Sbjct: 583  SNDVDVAVGSIIHTGMQNPNGGYENDCSLARLSERHYMMIAPTIQQTRSMCWIRKHMPNH 642

Query: 385  --GSVTLSDVTSMYTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAM 558
                V ++DVTSMYTAIC++GP++R              +FPFFT+KE+DVGLA+GIR +
Sbjct: 643  LRAKVNVADVTSMYTAICILGPYSRILLSELTDTDLTPKSFPFFTYKELDVGLADGIRVL 702

Query: 559  NLTHTGXAG 585
            N+THTG  G
Sbjct: 703  NITHTGELG 711


>AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p protein.
          Length = 939

 Score =  270 bits (663), Expect = 8e-73
 Identities = 123/189 (65%), Positives = 148/189 (78%), Gaps = 2/189 (1%)
 Frame = +1

Query: 25   PRPFKIAHTRTFGKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLC 204
            PR F+IA TRTFGKPPWFD V  EY ACRER+G++DYS FTK D  S+G EVV+LLQYLC
Sbjct: 524  PR-FRIAQTRTFGKPPWFDHVASEYRACRERIGIADYSPFTKYDFWSKGNEVVDLLQYLC 582

Query: 205  SNDVDVPVGSIIHTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKRHLPSN 384
            SNDVDV VGSIIHTGMQN  GGYENDCSLAR+SE HYMMIA TIQQTR   W+++H+P++
Sbjct: 583  SNDVDVAVGSIIHTGMQNPNGGYENDCSLARLSERHYMMIARTIQQTRSMCWIRKHMPNH 642

Query: 385  --GSVTLSDVTSMYTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAM 558
                V ++DVTSMYTAIC++GP++R              +FPFFT+KE+DVGLA+GIR +
Sbjct: 643  LRAKVNVADVTSMYTAICILGPYSRILLSELTDTDLTPKSFPFFTYKELDVGLADGIRVL 702

Query: 559  NLTHTGXAG 585
            N+THTG  G
Sbjct: 703  NITHTGELG 711


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,556,824
Number of Sequences: 53049
Number of extensions: 547392
Number of successful extensions: 1410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)