Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0756
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...   175   3e-44
AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    35   0.044
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    35   0.044
U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z78541-1|CAB01740.1|  452|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
            protein Y106G6H.5 protein.
          Length = 855

 Score =  175 bits (425), Expect = 3e-44
 Identities = 83/176 (47%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
 Frame = +1

Query: 61   GKPPWFDAVQREYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSII 240
            GKP WF+ V  EY ACRERVGL D SSF+K DI   G + VE LQ+LCS +VD P+G+ +
Sbjct: 491  GKPEWFERVASEYEACRERVGLMDMSSFSKYDIT--GEDAVEYLQFLCSANVDEPIGTTV 548

Query: 241  HTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLKR-HLPSNGSVTLSDVTSM 417
            +TGMQ+++GGY  DC+L+R+ E  + M+APTIQQ R  VW+K+        V + DVT  
Sbjct: 549  YTGMQHQKGGYVTDCTLSRLGEKKFFMVAPTIQQERVLVWMKKWQAILKARVHVQDVTGA 608

Query: 418  YTAICVMGPFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAMNLTHTGXAG 585
            YTA+ ++GP +R              +FP F  +EI++G+A GIRA+++TH G  G
Sbjct: 609  YTALDLIGPSSRYLMGDITGLSMSSNDFPTFRCQEINIGMATGIRAISVTHCGELG 664


>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 3/165 (1%)
 Frame = +1

Query: 91  REYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSIIHTGMQNERGG 270
           REY     + G+ D S   KI+++  G +  +L+ Y  ++ +   +G I    M    GG
Sbjct: 488 REYEMVTNKCGVIDLSWKGKIEVK--GNDAEKLMDYAIASQIPA-LGKISSGLMLTRHGG 544

Query: 271 YENDCSLARISENH--YMMIAPTIQQTRCKVWLKRHLPSNG-SVTLSDVTSMYTAICVMG 441
                 +         ++++    +++R   WL+R        V +S V+    ++ ++G
Sbjct: 545 ILGPMMIFHHDRQRSAFILLTEPERESRDLYWLRRAAAEKKFDVQVSIVSEYLASLALVG 604

Query: 442 PFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAMNLTHTG 576
           P +R               FP  + + I +G    + A + T TG
Sbjct: 605 PKSREVLSALTKSDVSDEGFPQKSTRMIRLGPVGVVCARSSTSTG 649


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 3/165 (1%)
 Frame = +1

Query: 91  REYWACRERVGLSDYSSFTKIDIQSQGREVVELLQYLCSNDVDVPVGSIIHTGMQNERGG 270
           REY     + G+ D S   KI+++  G +  +L+ Y  ++ +   +G I    M    GG
Sbjct: 495 REYEMVTNKCGVIDLSWKGKIEVK--GNDAEKLMDYAIASQIPA-LGKISSGLMLTRHGG 551

Query: 271 YENDCSLARISENH--YMMIAPTIQQTRCKVWLKRHLPSNG-SVTLSDVTSMYTAICVMG 441
                 +         ++++    +++R   WL+R        V +S V+    ++ ++G
Sbjct: 552 ILGPMMIFHHDRQRSAFILLTEPERESRDLYWLRRAAAEKKFDVQVSIVSEYLASLALVG 611

Query: 442 PFTRXXXXXXXXXXXXXXNFPFFTFKEIDVGLANGIRAMNLTHTG 576
           P +R               FP  + + I +G    + A + T TG
Sbjct: 612 PKSREVLSALTKSDVSDEGFPQKSTRMIRLGPVGVVCARSSTSTG 656


>U50069-7|AAB37561.1|  913|Caenorhabditis elegans Hypothetical
           protein C09B9.7 protein.
          Length = 913

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
 Frame = +1

Query: 118 VGLSDYS-SFTKID---IQSQGREVVELLQYLCSNDVDVPVGSIIHTGMQNERGGYENDC 285
           +G+S+ S    K+D   ++S+GR+V +LL++    D +  +  I     + ERGG     
Sbjct: 371 LGMSEISIKLAKLDMAALKSEGRKVQKLLKFTNLGDEEQTLKEIPGVRKKLERGG----- 425

Query: 286 SLARISENHYMMIAPTIQQTRCKVWLKRHLPSNGSVTLSDV 408
            L +  EN    I         K ++   LP+  SV  +D+
Sbjct: 426 -LLKSFENRVAGIQTIFNDMNIKTFIHELLPNADSVHKTDM 465


>Z78541-1|CAB01740.1|  452|Caenorhabditis elegans Hypothetical
           protein F19D8.1 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 203 VPTTWTFPSGVSFTLECRTSEGVTRMT 283
           VP  WTFPS V F+    T+ G   +T
Sbjct: 136 VPKRWTFPSSVLFSFTILTTIGYGNVT 162


>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical protein
            F20G4.1 protein.
          Length = 1615

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 285  AVILVTPSLVLHSSVNDTPDGNVHVVGTEILQ 190
            A+ L T +  L S++N  PDGN+  + + +LQ
Sbjct: 1458 AIRLWTDAKYLSSTLNKIPDGNLRAIISSVLQ 1489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,287
Number of Sequences: 27780
Number of extensions: 268154
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)