Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0756
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63500.1 68414.m07180 protein kinase-related low similarity t...    29   2.0  
At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family prote...    29   2.7  
At5g47580.1 68418.m05873 expressed protein strong similarity to ...    28   4.7  
At3g04960.1 68416.m00538 expressed protein low similarity to SP|...    28   4.7  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   6.2  
At3g14170.1 68416.m01791 expressed protein                             27   8.2  
At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-contain...    27   8.2  

>At1g63500.1 68414.m07180 protein kinase-related low similarity to
           protein kinase [Arabidopsis thaliana]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 265 LARSAFQCE*YSRRERPRRWNRDTAGVPPPRDLET 161
           L R A +C  Y  RERP   +  TA +P  +DLET
Sbjct: 220 LIRLASRCLQYEPRERPNPKSLVTAMIPLQKDLET 254


>At5g49070.1 68418.m06072 beta-ketoacyl-CoA synthase family protein
           similar to very-long-chain fatty acid condensing enzyme
           CUT1 [GI:5001734], beta-ketoacyl-CoA synthase
           [Simmondsia chinensis][GI:1045614]
          Length = 464

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = +1

Query: 172 REVVELLQYLCSNDVD---VPVGSIIHTGMQNERGGYENDCSLARISENHYMMIAPTIQQ 342
           R  V LL + C    D   VP+ ++I T   +++   E+    ARI E  ++    +I +
Sbjct: 48  RVKVYLLDFTCYRAPDSNRVPMSTLIETIYLDDKLDQESIDFQARILERSWLSNQTSIPR 107

Query: 343 TRCKVWLKRHLPSNGSVTLSDVTSMYTAI 429
           +  ++ LK+ L    SV +  +T+++T++
Sbjct: 108 SLMEIPLKKSL---SSVKIETMTTIFTSV 133


>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
 Frame = +1

Query: 187 LLQYLCSNDVDVPVGSIIHTGMQNERGGYENDCSLARISENHYMMIAPTIQQTRCKVWLK 366
           +L  LC +   VP    I     N+R      C LA  +E     +A  IQQ   K W+ 
Sbjct: 162 MLMILCFSATTVPTTKRILESKYNKRYDVAMKCPLA--TER---TVAKKIQQDLSKFWMM 216

Query: 367 RHLPSNGSVTLSDVTSMYTA-ICVMGPFT 450
            H  S   V    VT   +   C++   T
Sbjct: 217 AHTSSPQFVMARSVTCTASGFFCLLSAIT 245


>At3g04960.1 68416.m00538 expressed protein low similarity to
           SP|P32380 NUF1 protein (Spindle poly body spacer protein
           SPC110) {Saccharomyces cerevisiae}
          Length = 556

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 147 QDRHTVSRSRGGGTPAVSLFQRRGRSRREYHSHWNAERARGLRE*LQPG 293
           +++H   + R    PA+   + R RSR EY S  +AE+ R     ++PG
Sbjct: 258 REQHLELKQRKKEKPAIRA-ETRKRSRLEYESPLSAEKGRYAETLIRPG 305


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 CRERVGLSDYSSFTKIDIQSQGREVVELLQY 198
           CRER   S Y  FT+  I+S  + V E+  Y
Sbjct: 810 CRERTKSSSYFEFTQAGIESACQHVSEVAAY 840


>At3g14170.1 68416.m01791 expressed protein 
          Length = 484

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 123 ADPLPARPVLTLHRVEPGRLPESSRVRYLER 31
           A PL  RP     + EP +L  SS V Y+ R
Sbjct: 222 AGPLQCRPATAPTKAEPKKLSLSSTVNYINR 252


>At2g28320.1 68415.m03442 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 737

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 449 VNGPMTQMAVYIDV-TSERVTEPLLGRCRFSH 357
           +N  + +MA  I   T E + E LLG CRF+H
Sbjct: 695 LNKLVIEMAFLIQANTEEELPEYLLGTCRFNH 726


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,743
Number of Sequences: 28952
Number of extensions: 248575
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)