Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0755
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    28   1.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   2.6  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   2.6  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    27   3.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.0  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   NTGRPPLXIPSSNTDEAFSAVYEEIPSTNP 98
           NT  PP   P+SN  +AF A Y + P  +P
Sbjct: 733 NTSYPPYMSPTSNMPQAFQA-YSQYPYQHP 761


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 585 TLPDISFLNGRPNIYLNPMKVNVSPKSS 668
           TLPD+SF  G+  I   P   NVS   S
Sbjct: 126 TLPDLSFFQGKSEINKKPSVNNVSENIS 153


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 156 EEETADGAKLSDSESNLYATVNKTHIKRT-HA 248
           + ET++ +  S+SES  Y+T  +  +KRT HA
Sbjct: 310 DSETSETSSESESESEYYSTSKQPPVKRTKHA 341


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 105 FHVQNLNNRMYDEVLIEEEETADGAKLSDSES 200
           +HVQ++  R Y E +  E+E A+ AKL +SES
Sbjct: 168 YHVQSIQQREYAEDM-REQELAEKAKL-ESES 197


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 60  FSAVYEEIPSTNPTLFHVQNLNNRMYDEVLIEEEETADGA 179
           FS +Y++ PS NP  +H+  L +R     L   E   DG+
Sbjct: 460 FSKIYKDNPSLNPPSWHLITLVHRNEKSSLPNLELYIDGS 499


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 463 ACNFRAHVMNVSCLKSWSHHSCRSLKKETVRSQY 564
           +C    HV ++SC++ W  +S     ++  R  Y
Sbjct: 212 SCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPY 245


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 166  QQMEPN*ATVKVIFMLLSTKHILKERTPIL*IVRQSSEAAESLVLLNHQPLV 321
            Q ME     ++  F+LLS    +   TPI  ++RQ +   E L++    P V
Sbjct: 1699 QHMEEKKKALENPFILLSEVSEILPETPIQEVLRQHNADPEQLLMSTRTPSV 1750


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,160
Number of Sequences: 5004
Number of extensions: 42222
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)