Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0755
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U97403-5|AAO21397.1|  268|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 75   EEIPSTNPTLFHVQNLNNRMYDE----VLIEEEETADGAKLSDSESN 203
            ++IP   P L  VQNLNN+  +E    +LI+EE+ A      +++ N
Sbjct: 1445 KQIPLVKPYLRQVQNLNNKAINEALNQLLIDEEDHAGLRSSIEAQDN 1491


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 75   EEIPSTNPTLFHVQNLNNRMYDEVLI-EEEETADGAKLSDSES 200
            +E  +T+P L H Q+L++  +  VLI ++E+T D   L D+ S
Sbjct: 946  QEFHTTSPKLPHRQHLSDMRWHNVLIYQDEKTHDHVLLVDNSS 988


>U97403-5|AAO21397.1|  268|Caenorhabditis elegans Hypothetical
           protein T10E9.7b protein.
          Length = 268

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +3

Query: 516 PSFLQKLKEGDCEKPVFILYPSYTLPDISFLNGRPNIYLNPMKVNVSPKSSQIKRNRVQV 695
           P F+QK++    ++   +++PS  +P +SFL G  +     +   ++      ++NR++V
Sbjct: 67  PKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTF-ITGMDVPTRKNRLEV 125


>U97403-4|AAB52474.2|  445|Caenorhabditis elegans Hypothetical
           protein T10E9.7a protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +3

Query: 516 PSFLQKLKEGDCEKPVFILYPSYTLPDISFLNGRPNIYLNPMKVNVSPKSSQIKRNRVQV 695
           P F+QK++    ++   +++PS  +P +SFL G  +     +   ++      ++NR++V
Sbjct: 244 PKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNHSAQFTNLTF-ITGMDVPTRKNRLEV 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,684,085
Number of Sequences: 27780
Number of extensions: 228955
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)