Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0755
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24290.2 68418.m02858 integral membrane family protein contai...    28   5.2  
At5g24290.1 68418.m02857 integral membrane family protein contai...    28   5.2  
At1g48400.1 68414.m05406 F-box family protein contains F-box dom...    28   6.8  
At1g28700.1 68414.m03535 expressed protein similar to GI:2827651...    27   9.0  

>At5g24290.2 68418.m02858 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 534

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  IPSTNPTLFHVQNLNNRMYDEVLIEEEETADGAKLSDSE--SNL 206
           + S++  L +V+N   R  ++  IEEEE  +   LSDSE  SNL
Sbjct: 107 LESSSTNLPNVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNL 150


>At5g24290.1 68418.m02857 integral membrane family protein contains
           Pfam domain PF01988: Integral membrane protein
          Length = 550

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  IPSTNPTLFHVQNLNNRMYDEVLIEEEETADGAKLSDSE--SNL 206
           + S++  L +V+N   R  ++  IEEEE  +   LSDSE  SNL
Sbjct: 123 LESSSTNLPNVENKRQRNGEDCEIEEEEENNERSLSDSEEKSNL 166


>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 120 LNNRMYDEVLI----EEEETADGAKLSDSESNLYATVNKTHIKR 239
           ++N  +DE ++    EEEET+   +  D     +A ++ +HIK+
Sbjct: 49  VDNLCFDESMVVYPNEEEETSGSLRFCDFVDKTFALLSNSHIKK 92


>At1g28700.1 68414.m03535 expressed protein similar to
           GI:2827651,GP:10764853, GI:10764852, GI:7527728,
           GI:4406788, GI:6063544 [Arabidopsis thaliana];
           expression supported by MPSS
          Length = 338

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 87  STNPTLFHVQNLNNRMYDEVLIEEEETADGAKLSDSESNLYATVNKTHIK 236
           +++P    +QN+N R+    + E E   D A   ++++ + A VNK +++
Sbjct: 32  ASDPISGLLQNVNTRLIQYPVDELETVLDKASTGNNKTVIIAMVNKAYVE 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,732,421
Number of Sequences: 28952
Number of extensions: 203861
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)