Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0754
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.9  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   3.8  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   5.0  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   5.0  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    26   6.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.7  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   8.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 263 PPPGKFMSPPDHSSPLPNTSTS 198
           PPP    S    SSPLP+TSTS
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTS 338



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 260 PPGKFMSPPDHSSPLPNTSTS 198
           PP    S   +SSPLP TSTS
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTS 228



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 260 PPGKFMSPPDHSSPLPNTSTS 198
           PP    S   +SSPLP TSTS
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTS 284


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 465 CKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEKYYF 325
           C F IRPT    R     + KRL  + N++ +  + D +T+ E+  F
Sbjct: 145 CLFFIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLTLEERAAF 191


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 499 YLNSGGFIGYLPEIYEIINSNPIKDKDDDQLY 594
           +L +G F+GY P +   I +N IK KD  + Y
Sbjct: 147 FLETGPFVGYYPSVVSKIRAN-IKLKDVGENY 177


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 526 YLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKIT 645
           +L EIY+ I  N I   ++     + +Y+   L++S+KIT
Sbjct: 719 FLSEIYKAIKENEIIVAEEHDTELSFLYIWSKLQQSVKIT 758


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 268 KVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKF--KSF-PDTRVL 423
           +++LL+ R+E   KA     ++ F  SY       LDE  K++  K+F PD R L
Sbjct: 617 QLLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDE-AKRYMSKNFQPDKRAL 670


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 607 YLDKDLRESLKITLDHKSEIFQNLNGALSDVQLRANTTEE 726
           Y+D ++ E+   T D+     Q+LNG +S++   A    E
Sbjct: 9   YVDSNMNETQNDTTDNFDAEMQDLNGYISEIVDEARNVSE 48


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 318 VVSFHQLLKPVFQKNYFLSTTGEV 247
           V + H++L P+FQKN+      E+
Sbjct: 285 VQNIHKILLPIFQKNFLTGFPAEI 308


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +1

Query: 601 KIYLDKDLRESLKITLDHKSE 663
           ++YLDKD+ E+ ++T+++ SE
Sbjct: 214 QLYLDKDIDENEEVTINYGSE 234


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 247 SCHHLTTLHPCPIPR 203
           +C HL  LHP  IPR
Sbjct: 125 ACQHLAKLHPSEIPR 139


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 88  LFNSHTQATDEVVVLTVATDDNHG 159
           +FN  ++ T  V  +   TD+NHG
Sbjct: 1   MFNDQSKTTSSVKGICATTDNNHG 24


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +1

Query: 292 LEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQ 471
           +EK++ A  K +++ F D  D+    N    V  +KS P+       E F   +A    +
Sbjct: 192 MEKMLNACTKPEMMQFNDGNDIPLRSN---PVSLWKSLPE------GETFTPQEAAKILK 242

Query: 472 YPNIEVVSPYLNSGGF 519
           +P+IE ++   N+  F
Sbjct: 243 WPSIEELNMRQNATHF 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,151
Number of Sequences: 5004
Number of extensions: 67146
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)