Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0754
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   7e-31
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               32   0.43 
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          31   1.3  
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)                   30   2.3  
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           28   9.3  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score =  131 bits (316), Expect = 7e-31
 Identities = 80/207 (38%), Positives = 116/207 (56%), Gaps = 1/207 (0%)
 Frame = +1

Query: 118 EVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEEWSGGDMNF-PGGGQKVILLKNRL 294
           E++VLTVAT++  G  RF+RS   Y++ V V+G    W GG++   PGG  K+ LLK+ +
Sbjct: 35  ELLVLTVATEETDGYTRFMRSCSHYDVPVRVIGMNTSWKGGNVRTDPGGAHKINLLKDAV 94

Query: 295 EKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQY 474
            +    D K  +++F+D    + L     + K      DT    SA++F           
Sbjct: 95  AEY--KDKKNLVLMFSDRISTLRLA----MAK------DT----SAQEF----------- 127

Query: 475 PNIEVVSPYLNSGGFIGYLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKITLDH 654
                +    +SG FIGY P  ++IIN  P+KD+DDDQL+YT IYLDK+ R+   + LDH
Sbjct: 128 -----IKNLYSSG-FIGYAPVFHQIINEKPVKDEDDDQLFYTNIYLDKEKRDKFNMKLDH 181

Query: 655 KSEIFQNLNGALSDVQLRANTTEEWPY 735
           K+EIF NLNGA  +VQL+    + W Y
Sbjct: 182 KAEIFMNLNGAEEEVQLKFEGEKVWLY 208


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 27/97 (27%), Positives = 42/97 (43%)
 Frame = -1

Query: 528 VTYKSTRVQIWTYNFNVWILSCKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVI 349
           +T +S  V I +++  V I S     R   + SR +H  I  R      +I   + HD I
Sbjct: 331 ITSRSRHVTITSHHIKVTITSRS---RHVTITSRSRHVTITSRSRH-GTIISRSRHHDNI 386

Query: 348 TVSEKYYFLFVVSFHQLLKPVFQKNYFLSTTGEVHVT 238
           TV+  +  + V + H  +      NY   TT   H+T
Sbjct: 387 TVTTCHNHITVTTCHNHITSHQGHNYITVTTCHNHIT 423


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 94  NSHTQATDEVVVLTVATDDNHGLERFLRSAKVYNIDVEVLGKGEE 228
           NS   A++E+ +LT +  D   +   LRS K   ++V+ +G+G+E
Sbjct: 527 NSVVTASEEISLLTDSEGDQRVVTEELRSDKRIRVNVQGMGEGDE 571


>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 280 LKNRLEKLMKADNKEKIILFTDS-YDVMFLGNLDEIVKKFKSFPDT 414
           LK  L +L K D+ ++ I + D+    ++ GN  ++V     FPDT
Sbjct: 288 LKGLLYRLYKVDSSDQKISYLDTKICTIYTGNFRDVVNGLVQFPDT 333


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 482 MFGY*VASFASGQQNCSAEKSTRVSGKDLNFFTISS 375
           +FGY + S   G Q CS     R      NFFT  S
Sbjct: 317 IFGYDIISDGRGNQRCSVHPDRRTLKASFNFFTFWS 352


>SB_45294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 498 WTYNFNVWILSCKF--CIRPTKLFSRKKHTCI 409
           W + F ++   CK   C+ P +LFS K   C+
Sbjct: 7   WLFAFYIYACPCKLTVCVSPLRLFSCKLTVCV 38


>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 10  VELIFMMWFTQ-KMGLFIQLILCVFVILFNSH 102
           V++ FM+ FT  + GLF  +++C ++I    H
Sbjct: 229 VDMPFMLLFTDIRQGLFYAMLMCFWIIFTGEH 260


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 621 ILIKIYLCVVQXXXXXXLDWVAIDNLIYFWQVTYKS 514
           IL+ +YLC++        +W  +D+  Y W +T+ +
Sbjct: 133 ILVTVYLCLMAGLGMYLEEWSFLDS-FYAWFITFST 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,942,157
Number of Sequences: 59808
Number of extensions: 488052
Number of successful extensions: 1329
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)