Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0753
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 170 5e-43
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716... 60 8e-10
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 54 5e-08
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 38 0.004
04_04_0790 + 28083116-28083337,28083446-28083652,28083739-280838... 34 0.061
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 30 0.75
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 30 0.99
09_02_0252 - 6315834-6315959,6316074-6317018 29 1.3
03_02_0836 - 11637618-11637962 29 1.7
04_04_0633 - 26771487-26771591,26771708-26771782,26771906-267719... 28 3.0
01_06_0989 - 33618841-33619161 28 4.0
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 27 5.3
11_01_0050 - 384860-384874,384942-385325,385426-385914,386057-38... 27 5.3
07_03_0129 + 13987100-13987572,13988128-13988321,13988474-13989051 27 5.3
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 27 5.3
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 27 5.3
01_01_0834 + 6522709-6523452 27 5.3
11_06_0464 + 23894893-23895077,23895148-23895706 27 7.0
05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110 27 7.0
04_04_0699 - 27345243-27346199 27 7.0
01_01_1039 - 8200922-8201553,8201652-8201784 27 7.0
10_01_0071 - 905696-909028 27 9.2
06_02_0011 - 10569471-10572245 27 9.2
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 170 bits (413), Expect = 5e-43
Identities = 75/113 (66%), Positives = 94/113 (83%), Gaps = 4/113 (3%)
Frame = +1
Query: 1 QGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDYGSSDNKTQFEY 180
+GGSNGGLL+AAC+NQRPDL+G A+ VGV+DMLRF KFTIGHAW +DYG SDN+ +F +
Sbjct: 552 EGGSNGGLLIAACVNQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTTDYGCSDNEEEFHW 611
Query: 181 LLKYSPLHNIQPPSE----NRPEYPATLILSADHDDRVVPLHSLKFVAELQHV 327
L+KYSPLHN++ P E N +YPA ++L+ADHDDRVVPLHSLK +A LQ+V
Sbjct: 612 LIKYSPLHNVRRPWEQSFVNCCQYPAIMLLTADHDDRVVPLHSLKLLATLQYV 664
>09_04_0503 -
18170645-18170858,18171029-18171222,18171419-18171629,
18172162-18172553,18172926-18173054,18173353-18173487,
18173885-18174088,18174716-18174771,18174793-18174950,
18175864-18176231
Length = 686
Score = 60.1 bits (139), Expect = 8e-10
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Frame = +1
Query: 4 GGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDY---GSSDNKTQF 174
G S GGLLV A IN PDL+ AAV++V LD+ + + DY G + T+F
Sbjct: 526 GCSAGGLLVGAVINMLPDLFSAAVLKVPFLDICNTMMDSTLPLTILDYEEFGDPNISTEF 585
Query: 175 EYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFVAELQHVAGRSPAQRA 354
+ + YSP N+ P YP L+ ++ +D RV + K+V++++ + +S +
Sbjct: 586 DTIRSYSPYDNLSPDI----CYPPVLVTASFNDTRVGVWEAAKWVSKVRDITCQSCSW-- 639
Query: 355 PLLARFDTKAGHGG 396
++ + + ++GH G
Sbjct: 640 SVILKTNMQSGHFG 653
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 54.0 bits (124), Expect = 5e-08
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +1
Query: 4 GGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDY---GSSDNKTQF 174
G S GGLLVA+ IN RPDL+ A V++V LD+ I DY G + +F
Sbjct: 574 GYSAGGLLVASAINTRPDLFRAVVLKVPFLDVCNTLLHPILPLTAIDYEEFGFPVDHEEF 633
Query: 175 EYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFVAELQHVAGRSPAQRA 354
+ KYSP NIQ ++ P YPA + S+ + R + K+VA+++ V P + +
Sbjct: 634 LSIRKYSPYDNIQ---KDVP-YPAVFVTSS-FNTRFGVWEAAKWVAKVREVTRYDPERPS 688
Query: 355 PL 360
L
Sbjct: 689 QL 690
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1
Query: 4 GGSNGGLLVAACINQRPDLYGAAVVQVGVLDML 102
G S GGLL+ A +N RPDL+ AAV V +D+L
Sbjct: 617 GRSAGGLLMGAVLNMRPDLFKAAVAGVPFVDVL 649
>04_04_0790 +
28083116-28083337,28083446-28083652,28083739-28083809,
28083898-28084063,28084189-28084788,28084928-28085323
Length = 553
Score = 33.9 bits (74), Expect = 0.061
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 1 QGGSNGGLLVAACINQ 48
+G SNGGLLVAACINQ
Sbjct: 534 EGASNGGLLVAACINQ 549
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 30.3 bits (65), Expect = 0.75
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 198 GRVLQQVFELGLIVGASVVRDPGVSYRELLEA*HVKNSDLHDGGPVEVGALVDAGGD 28
G ++Q+ + VV GV ++ LL+ SD H G PVE GGD
Sbjct: 228 GSIIQKFYHENFTADRLVVAASGVDHQYLLDVAEPLLSDWHKGSPVERPESKYIGGD 284
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 29.9 bits (64), Expect = 0.99
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 365 ASSGARCAGERPATCCSSATNFSECSGTTRSSW 267
+S GA AG+ P T ++A FS + TT S W
Sbjct: 462 SSVGASVAGQAPQTASTTALTFSFPASTTLSPW 494
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 404 GFPP-PCPALVSNLASSGARCAGERPATCCSSAT 306
G+P P PA ++ SS + A + A+CCSS T
Sbjct: 138 GYPRMPTPARAASCPSSSSAAAADDAASCCSSDT 171
>03_02_0836 - 11637618-11637962
Length = 114
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 287 GTTRSSWSADSISVAGYSGRFSLGG*MLC 201
G R SWS DS+S G GR GG C
Sbjct: 33 GCIRKSWSNDSLSSYGGGGRAGGGGAQAC 61
>04_04_0633 -
26771487-26771591,26771708-26771782,26771906-26771981,
26772096-26772144,26772848-26773037,26773119-26773292,
26773415-26773543
Length = 265
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 377 VSNLASSGARCAGERPATCCSSATN 303
VS++ SS + CA PAT +SA N
Sbjct: 122 VSSITSSNSSCANNAPATSMASAAN 146
>01_06_0989 - 33618841-33619161
Length = 106
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 289 LHSLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDE 426
LH + V +++ V + R L + AG G G+P K++ E
Sbjct: 32 LHEMAAVEKMERVEVKIRVTRRQLQELLEKAAGEGKGRPVEKVLAE 77
>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
Length = 637
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 184 LKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLK-FVAELQHVAGRSPAQRAPL 360
L+ P ++ P + + L+ + D D + + F A +A RSP +A L
Sbjct: 183 LRVEPASSLAVPEPDMHRHLGRLLSAGDGADVTFRVAGGEAFTAHRCVLAARSPVFKAEL 242
Query: 361 LARFDTKAGHGGGKPTTKIID 423
+R G+P T++ID
Sbjct: 243 YSRGGFLRPAAAGRPGTRVID 263
>11_01_0050 -
384860-384874,384942-385325,385426-385914,386057-386233
Length = 354
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 142 DYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPA 246
DYGS K + E L+ P+H I P P+Y A
Sbjct: 21 DYGSWTLKQKLEDLINCDPIHGIMP---KNPKYKA 52
>07_03_0129 + 13987100-13987572,13988128-13988321,13988474-13989051
Length = 414
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 85 GVLDMLRFQKFTIGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPP 219
GVLD L Q +G AW +GS + Y L YS ++QPP
Sbjct: 48 GVLDTLNLQS-GMGDAWNFIWGSDKYTAKKFYKLNYS---SLQPP 88
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 299 SECSGTTRSSWSADSISVAGYSGRFSLGG*MLCKGEYFSKYSNWVLLSE 153
S SG T S+ AD ++V +G+ G C+GE SKY+ + + E
Sbjct: 420 SHRSGDTDDSFIAD-LAVGAAAGQIKAGA--PCRGECLSKYNQLLRIEE 465
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 398 PPPCPALVSNLASSGARCAGERPATCCSSAT 306
PPP P +S A SG R A RP +AT
Sbjct: 158 PPPRPPDLSPRAGSGGRKASRRPKKVAVAAT 188
>01_01_0834 + 6522709-6523452
Length = 247
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 181 LLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFVA 312
LL PL QPP P+ +L+A H VP H + VA
Sbjct: 74 LLPELPLGRSQPPIRVYLHAPSGTLLAAAHGPAPVPAHRARAVA 117
>11_06_0464 + 23894893-23895077,23895148-23895706
Length = 247
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 304 FVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIID 423
F A +A RSP RA L +R G+P T+++D
Sbjct: 183 FAAHRCVLAARSPVFRAELYSRGGFLRPAAAGRPETRVVD 222
>05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110
Length = 286
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 216 RLNVV*GRVLQQVFELGLIVGASVV 142
R +V RV+ QVFELG+IV + ++
Sbjct: 200 RAKLVRHRVISQVFELGIIVHSIII 224
>04_04_0699 - 27345243-27346199
Length = 318
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 383 ALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSWSADS 255
A + A++G + PAT SS ++ S C+ TT SS ++ S
Sbjct: 221 AAAAAAAAAGDKRPSPEPATSESSFSSSSSCTTTTTSSSTSSS 263
>01_01_1039 - 8200922-8201553,8201652-8201784
Length = 254
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -2
Query: 404 GFPPPCPALVSNLASSGARCAGERPATCCSSATNFSECSGTTRSSWSADSISVAGYSGRF 225
G+ AL S L GA C TC +SAT + C T + +A + YS
Sbjct: 57 GYGTNTTALSSALYGDGASCGACYLVTCDASATRW--CKNGTSVTVTATNYCPPNYSESG 114
Query: 224 SLGG 213
GG
Sbjct: 115 DAGG 118
>10_01_0071 - 905696-909028
Length = 1110
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 450 HETKXISVFVNNLSGGFPAAV 388
H + + V NN+SGG PAAV
Sbjct: 282 HALRLLDVANNNVSGGIPAAV 302
>06_02_0011 - 10569471-10572245
Length = 924
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 187 KYSPLHNIQPPSENRPEYPATLILSADHDDR---VVPLHSLKFVAEL 318
+Y PL + P PAT +L +++ DR V +S FVA L
Sbjct: 218 EYDPLSKVPPAFPPYKHQPATSVLRSNYLDRYKLFVSCNSTSFVASL 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,159
Number of Sequences: 37544
Number of extensions: 220230
Number of successful extensions: 972
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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