Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0751
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              29   4.8  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     28   8.4  
SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)              28   8.4  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               28   8.4  

>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 526 SVPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 419
           SV CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_29777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 458 QHGPSRRTTRKHCSTTHRPTWDG-TRHD*WLHRAQSSD 568
           QH  ++ +T +H +T H  TW   T+HD   H     D
Sbjct: 92  QHSTTQHSTTQHSTTQHDTTWHSKTQHDTARHSTARHD 129


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
 Frame = +3

Query: 261 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 440
           + T +   +   Y TN  Y+  D +++ ++  T   L     L       + RRL     
Sbjct: 70  YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129

Query: 441 AQHADDSMDP--LDVPQGSTAPQRTARHGTEH 530
            QH   +  P     P  +TAP  T     ++
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDY 161


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 204 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 308
           L+YF+++ YCR +   L    +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 168  YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 290
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 563  SFERDAAISHDVFRPMSGGALWSSASLWYV*RVHAVISMLGRSIDGQSP-HVVKSRIK 393
            +F +D   SHD  +P     L S  +  Y   ++++ +M  R  + +SP  +VKS +K
Sbjct: 1420 AFTKDEVGSHDGIQPSKRHLLKSEKNRKYANAMNSLFTMGSRRSESESPLLIVKSALK 1477


>SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
          Length = 304

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 444 QHADDSMDPLDVPQ---GSTAPQRTARHGTEHVMTNGCIA 554
           + ++D  D ++VPQ   GSTA  R+ R      M   C+A
Sbjct: 265 EESEDESDEMNVPQIYQGSTATSRSGRQCRPSTMYQDCLA 304


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 541 LVMTCSVPCRAVRCGAVLPC 482
           +V+ C+V CRAV C  VL C
Sbjct: 333 VVLCCAVLCRAVSCRVVLCC 352



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 541 LVMTCSVPCRAVRCGAVLPCGTSRGSMLSSA 449
           +V+ C+V CRAV C AV  C     ++L  A
Sbjct: 358 VVLCCAVSCRAVLCRAVSCCAVLCRAVLCRA 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,997,554
Number of Sequences: 59808
Number of extensions: 490258
Number of successful extensions: 1515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)