Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0749
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    28   0.069
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    26   0.37 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.0  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 530 HTGSGLATGPDFGSGNCSVALE 465
           H G+G   GPD G GN SV ++
Sbjct: 309 HAGNGWQWGPDAGLGNLSVCID 330


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 373 NPRTVSKLRPTIRESIPSAEPKLPRS--GSKSVSRATEQFPE 492
           +PRT    +P  ++  P+AE K PR+      ++R   +F E
Sbjct: 208 SPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLARLKHEFAE 249


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 605 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 688
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 605 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 688
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 605 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 688
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 605 NQLQVQTGQYGHNTGQNYQTSQF-NGQSY 688
           + +Q Q  QYG++  QNY ++   NG  Y
Sbjct: 53  HHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 165 LNRKRKCKEISSTQHGLHPPTKPTRVSRN 251
           +NR  +  E+   Q   +PPTKP    R+
Sbjct: 534 INRHLRGNELLPMQQSQNPPTKPYGTCRS 562


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 671 FNGQSYQPGQFF 706
           FNGQ+Y PG  F
Sbjct: 751 FNGQAYFPGSRF 762


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,322
Number of Sequences: 336
Number of extensions: 3443
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)