Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0749
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ... 30 1.4
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 30 1.4
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 29 2.5
At3g19070.1 68416.m02422 cell wall protein-related similar to ve... 29 2.5
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 3.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 3.3
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 29 4.4
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 29 4.4
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 4.4
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 28 5.8
At5g40560.1 68418.m04922 DegP protease, putative contains simila... 28 7.6
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 28 7.6
At4g24100.1 68417.m03460 protein kinase family protein contains ... 28 7.6
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 28 7.6
At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family... 28 7.6
>At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein
(FLA10)
Length = 422
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 454 SKSVSRATEQFPEPKSGPVARPEPVWS-EPT*LCPRAGPISESSP 585
S S + A E P P P PV + PT P A P+ ESSP
Sbjct: 336 SSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSP 380
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 171 RKRKCKEISSTQHGLHPPTKPTRVSRNRSSKAKISITIMLIILLCPLERTQLQLVQQFQT 350
R R C +I G+ P +KPTR++ + S K T L L P + +L +
Sbjct: 46 RIRLCHKIQVAFGGVEPASKPTRIADHNSEK-----TAPLKALALPGPKGSKELRKSATE 100
Query: 351 RAAMVG--LKPKD 383
+A +VG L P+D
Sbjct: 101 KALVVGPTLPPRD 113
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 105 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPT-RVSRNRSSKAKI 272
S G +W+K+ K Q+ P + + +++ GLH PTK + V +RSS ++
Sbjct: 98 SSGLSSWAKSFKFQQQDPNRTDSGMSAFTRFTSELGLHLPTKGSEEVGDSRSSNTQV 154
>At3g19070.1 68416.m02422 cell wall protein-related similar to
vegetative cell wall protein gp1 [Chlamydomonas
reinhardtii] gi|12018147|gb|AAG45420;
Length = 346
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +1
Query: 397 RPTIRE---SIPSAEPKLPRSGSKSVSRATEQFPEPKS---GPVARP--EPVWSEPT*LC 552
RP++RE S PS+ + P S S +R + FP P S P P P EPT +
Sbjct: 187 RPSLREFFPSSPSSSIQPPESSSSKRARLSNIFPSPLSSSPSPFVNPFLRPQAQEPT-IP 245
Query: 553 PRAGPISESSP 585
PI + SP
Sbjct: 246 NFINPIPQISP 256
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 334 SNNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLP-RS--GSKSVSRATEQFPEPKSG 504
SN S G+ N TV+K++ E P P+ P RS G KS + + + P P G
Sbjct: 621 SNESNEGKA--SENAATVTKMKLVDIEKRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGG 678
Query: 505 PVARPEPVWSEP 540
P P P P
Sbjct: 679 PPPPPPPPGGGP 690
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +1
Query: 370 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*L 549
S P VS PT S+PS P + SV + P P + V P V PT
Sbjct: 176 SPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDV--TPTPP 233
Query: 550 CPRAGPISESSP 585
P + P SP
Sbjct: 234 TPPSVPTPSGSP 245
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +1
Query: 367 VSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVAR---PEPVWSE 537
V++P T PT S P PK P + +E P P P + P P+ S
Sbjct: 48 VTSPTTAPAKTPTASASSPVESPKSP-------APVSESSPPPTPVPESSPPVPAPMVSS 100
Query: 538 PT*LCPRAGPISESSP 585
P P P+++S P
Sbjct: 101 PVSSPPVPAPVADSPP 116
>At1g48650.1 68414.m05445 helicase domain-containing protein contains
similarity to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain, PF00035: Double-stranded RNA
binding motif
Length = 1197
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 596 NNQNQLQVQTGQYGHNTGQNYQTSQFNGQSYQPGQFFGQTPFMG 727
NN+NQLQ + GH + Y+T Q ++ F FMG
Sbjct: 1100 NNKNQLQTLLARAGHGS-PVYKTRQLKNNQFRSMVTFNGLDFMG 1142
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +1
Query: 322 SYS*SNNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKS 501
S+S S P L SN ++ L I ++ P P P S+S+ Q P P+
Sbjct: 540 SFSPSQPPPPPPLPSFSNRDPLTTLHQPINKTPPPPPPPPPPLPSRSIPPPLAQPPPPRP 599
Query: 502 GPVARPEP 525
P P P
Sbjct: 600 PPPPPPPP 607
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 28.3 bits (60), Expect = 5.8
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Frame = +3
Query: 207 HGLHPPTKPTRVSRNRSSKAKISITIMLIILLCPLE--RTQLQLVQQFQTRAAMVGLKPK 380
+GL P +P + + R + K+ I + + PL+ +T Q+F R A G+
Sbjct: 22 YGL-PRVRPIKDVQPRKT-LKVHNQIRAAVGVAPLKWNKTVAAYAQKFANRQAKAGVCDY 79
Query: 381 DSFKTSPNNQGIN--------SKRRTKITTVRLKISFKGNRTISRTKIRSSCKARTSME* 536
S + S G N + + + ++ K N + K + C T M
Sbjct: 80 SSMRHSDGPYGENIAAGWVQPKDQMSGPIAAKYWLTEKPNYDHATNKCKDVCGHYTQMV- 138
Query: 537 TNLTMSKGRANFRIKPNMLVIIKINY 614
N ++S G +FR N L+ I NY
Sbjct: 139 ANQSLSLGCGSFRCHENELIYIVCNY 164
>At5g40560.1 68418.m04922 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 410
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 500 DFGSGNCSV-ALETDFEPDRGNFGSALGIDSLIVGRSFETVLGFETHHSC 354
D+ G ++ A++TD + GN G + I + +VG +F+T LG + C
Sbjct: 94 DYAHGAINLPAIQTDAAMNPGNSGGPVCIGNKVVGVAFQT-LGHSNNIGC 142
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = -1
Query: 567 WPCPWT*LGWFTPYWF--WPCNWT*FWFWKLFCC 472
W W G +WF W C W FWF F C
Sbjct: 23 WFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYC 56
>At4g24100.1 68417.m03460 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 709
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 388 SKLRPTIRESIP---SAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSEPT*LCPR 558
+K++P R+S ++ L S S+ EP++ P R P +S P L R
Sbjct: 450 AKVKPLRRQSQSGPLTSRTVLSHSASEKSHIFERSESEPQTAPTVRRAPSFSGPLNLSTR 509
Query: 559 AGPISESSPI 588
A S S+PI
Sbjct: 510 ASSNSLSAPI 519
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/45 (22%), Positives = 21/45 (46%)
Frame = +1
Query: 403 TIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVARPEPVWSE 537
++ E++ P +P G+ ++ E P + PEP+W +
Sbjct: 304 SLAEALDMQPPVMPEDGTTRLTAGDEASPSGTVKDTSVPEPIWDD 348
>At1g77970.1 68414.m09086 hydroxyproline-rich glycoprotein family
protein
Length = 76
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 412 ESIPSAEPK-LPRSGSKSVSRATEQFPEPKSGPVARPEP 525
E P +EP+ P S KS S T PEP P+ P P
Sbjct: 23 EPSPESEPEPAPTSKPKSTSTPTP-IPEPAPTPIPEPAP 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,518
Number of Sequences: 28952
Number of extensions: 317412
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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