Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0747
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.23 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.23 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   8.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 563 EFIASMSQYLRTKTVANTVHFLCGYTAVTNFNQHLSQRFTNIVNVLNRSLVAHFIALLIV 384
           EF  S S YL T +  +T+  L   ++V+NFN+  S  F N +   +       + L ++
Sbjct: 28  EFNISTSNYLYTPS--STID-LYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLGVI 84

Query: 383 G 381
           G
Sbjct: 85  G 85


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -1

Query: 563 EFIASMSQYLRTKTVANTVHFLCGYTAVTNFNQHLSQRFTNIVNVLNRSLVAHFIALLIV 384
           EF  S S YL T +  +T+  L   ++V+NFN+  S  F N +   +       + L ++
Sbjct: 28  EFNISTSNYLYTPS--STID-LYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLGVI 84

Query: 383 G 381
           G
Sbjct: 85  G 85


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 106 SPERRANWNGPNFSRSPRPQPDTQTKKHTA 17
           +PER+    G   + +PR  PD + K  T+
Sbjct: 825 TPERKMEPPGVPLNSTPRSTPDKREKSPTS 854


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  NFSRSPRPQPDTQTKKHTAKQKNV 2
           N S  P+PQP   T K    ++NV
Sbjct: 183 NLSSVPQPQPVLPTYKWMQVKRNV 206


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  NFSRSPRPQPDTQTKKHTAKQKNV 2
           N S  P+PQP   T K    ++NV
Sbjct: 183 NLSSVPQPQPVLPTYKWMQVKRNV 206


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  NFSRSPRPQPDTQTKKHTAKQKNV 2
           N S  P+PQP   T K    ++NV
Sbjct: 183 NLSSVPQPQPVLPTYKWMQVKRNV 206


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 498 QKMHCIGHSLGAQILGHAGDE 560
           Q+MH  GH +    + H  DE
Sbjct: 244 QEMHRKGHEIAVHSITHNDDE 264


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 336  TVPNSYLIMLDHSLYTNN 389
            TVP+ YL+++ +S++  N
Sbjct: 1011 TVPSMYLLLVIYSVFNMN 1028


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 336  TVPNSYLIMLDHSLYTNN 389
            TVP+ YL+++ +S++  N
Sbjct: 1011 TVPSMYLLLVIYSVFNMN 1028


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 254 VFIQVWV*EDAVSCFIDGKRFYLV 183
           +  Q+W   D  S FIDG  F ++
Sbjct: 281 ILAQLWATWDPQSPFIDGPVFVIL 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,474
Number of Sequences: 336
Number of extensions: 3851
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)